Coexpression cluster: Cluster_32 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 6.77% (9/133) 4.31 0.0 0.0
GO:0044281 small molecule metabolic process 9.77% (13/133) 3.01 0.0 2e-06
GO:0006082 organic acid metabolic process 7.52% (10/133) 3.35 0.0 5e-06
GO:0043436 oxoacid metabolic process 7.52% (10/133) 3.36 0.0 6e-06
GO:0019752 carboxylic acid metabolic process 7.52% (10/133) 3.36 0.0 6e-06
GO:0008652 cellular amino acid biosynthetic process 3.76% (5/133) 4.8 1e-06 7.2e-05
GO:1901605 alpha-amino acid metabolic process 3.76% (5/133) 4.71 1e-06 8.6e-05
GO:0006725 cellular aromatic compound metabolic process 9.77% (13/133) 2.14 9e-06 0.000284
GO:0016053 organic acid biosynthetic process 4.51% (6/133) 3.67 8e-06 0.0003
GO:0046394 carboxylic acid biosynthetic process 4.51% (6/133) 3.67 8e-06 0.0003
GO:1901360 organic cyclic compound metabolic process 9.77% (13/133) 2.11 1.1e-05 0.000348
GO:0006457 protein folding 3.01% (4/133) 4.96 8e-06 0.000357
GO:0046483 heterocycle metabolic process 9.77% (13/133) 2.15 8e-06 0.000377
GO:0009451 RNA modification 3.01% (4/133) 5.0 7e-06 0.000393
GO:0009982 pseudouridine synthase activity 2.26% (3/133) 5.78 2.1e-05 0.000586
GO:0008150 biological_process 39.1% (52/133) 0.77 2.2e-05 0.000597
GO:0044283 small molecule biosynthetic process 4.51% (6/133) 3.38 2.6e-05 0.00063
GO:0008173 RNA methyltransferase activity 2.26% (3/133) 5.68 2.6e-05 0.000645
GO:0001522 pseudouridine synthesis 2.26% (3/133) 5.5 3.8e-05 0.000858
GO:0006139 nucleobase-containing compound metabolic process 8.27% (11/133) 2.04 8.4e-05 0.001811
GO:0036094 small molecule binding 15.79% (21/133) 1.31 0.000108 0.002213
GO:0005737 cytoplasm 3.01% (4/133) 3.91 0.000149 0.002661
GO:0006807 nitrogen compound metabolic process 18.8% (25/133) 1.14 0.000143 0.002665
GO:0016866 intramolecular transferase activity 2.26% (3/133) 4.89 0.000142 0.00276
GO:0016879 ligase activity, forming carbon-nitrogen bonds 2.26% (3/133) 4.78 0.000177 0.003043
GO:0016853 isomerase activity 3.76% (5/133) 3.23 0.000208 0.003428
GO:1901607 alpha-amino acid biosynthetic process 2.26% (3/133) 4.46 0.000347 0.005517
GO:0071704 organic substance metabolic process 21.05% (28/133) 0.96 0.000438 0.006057
GO:0009067 aspartate family amino acid biosynthetic process 1.5% (2/133) 6.0 0.000417 0.006167
GO:0034641 cellular nitrogen compound metabolic process 9.77% (13/133) 1.59 0.000406 0.006221
GO:0016874 ligase activity 3.01% (4/133) 3.51 0.000437 0.006251
GO:0009987 cellular process 21.05% (28/133) 0.95 0.000494 0.006422
GO:0003674 molecular_function 49.62% (66/133) 0.49 0.000482 0.006467
GO:0044238 primary metabolic process 20.3% (27/133) 0.96 0.00053 0.006684
GO:0009066 aspartate family amino acid metabolic process 1.5% (2/133) 5.68 0.000667 0.007944
GO:0008152 metabolic process 26.32% (35/133) 0.79 0.000653 0.008006
GO:0003824 catalytic activity 30.08% (40/133) 0.71 0.000718 0.008328
GO:0042440 pigment metabolic process 1.5% (2/133) 5.54 0.000813 0.009175
GO:0044237 cellular metabolic process 18.05% (24/133) 0.97 0.001007 0.011077
GO:0090304 nucleic acid metabolic process 6.02% (8/133) 1.97 0.00106 0.011368
GO:0016070 RNA metabolic process 5.26% (7/133) 2.15 0.001098 0.011491
GO:0050662 coenzyme binding 4.51% (6/133) 2.37 0.001133 0.011577
GO:0000166 nucleotide binding 13.53% (18/133) 1.15 0.001193 0.011634
GO:1901265 nucleoside phosphate binding 13.53% (18/133) 1.15 0.001193 0.011634
GO:1901566 organonitrogen compound biosynthetic process 6.02% (8/133) 1.92 0.001345 0.012544
GO:0140098 catalytic activity, acting on RNA 3.76% (5/133) 2.64 0.001322 0.012604
GO:0097159 organic cyclic compound binding 21.8% (29/133) 0.83 0.00144 0.012866
GO:1901363 heterocyclic compound binding 21.8% (29/133) 0.83 0.00144 0.012866
GO:0019867 outer membrane 1.5% (2/133) 5.0 0.001751 0.01502
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 1.5% (2/133) 5.0 0.001751 0.01502
GO:0016741 transferase activity, transferring one-carbon groups 3.76% (5/133) 2.48 0.002101 0.017673
GO:0140101 catalytic activity, acting on a tRNA 2.26% (3/133) 3.5 0.002421 0.019594
GO:0009058 biosynthetic process 8.27% (11/133) 1.45 0.002402 0.019818
GO:0004834 tryptophan synthase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0006144 purine nucleobase metabolic process 0.75% (1/133) 8.0 0.003903 0.024992
GO:0009113 purine nucleobase biosynthetic process 0.75% (1/133) 8.0 0.003903 0.024992
GO:0008252 nucleotidase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0006426 glycyl-tRNA aminoacylation 0.75% (1/133) 8.0 0.003903 0.024992
GO:0004055 argininosuccinate synthase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0004637 phosphoribosylamine-glycine ligase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0004820 glycine-tRNA ligase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0008253 5'-nucleotidase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0009976 tocopherol cyclase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0003937 IMP cyclohydrolase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0009975 cyclase activity 0.75% (1/133) 8.0 0.003903 0.024992
GO:0008144 drug binding 10.53% (14/133) 1.19 0.003316 0.026341
GO:0043168 anion binding 12.78% (17/133) 1.02 0.004208 0.026547
GO:0072522 purine-containing compound biosynthetic process 2.26% (3/133) 3.13 0.005009 0.031143
GO:0035639 purine ribonucleoside triphosphate binding 10.53% (14/133) 1.12 0.005375 0.032027
GO:0030170 pyridoxal phosphate binding 2.26% (3/133) 3.09 0.005332 0.032219
GO:0070279 vitamin B6 binding 2.26% (3/133) 3.09 0.005332 0.032219
GO:0043167 ion binding 17.29% (23/133) 0.8 0.005723 0.03363
GO:0003723 RNA binding 3.76% (5/133) 2.12 0.006058 0.035123
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.75% (1/133) 7.0 0.007791 0.035183
GO:0004347 glucose-6-phosphate isomerase activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0004392 heme oxygenase (decyclizing) activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0006788 heme oxidation 0.75% (1/133) 7.0 0.007791 0.035183
GO:0008649 rRNA methyltransferase activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0006525 arginine metabolic process 0.75% (1/133) 7.0 0.007791 0.035183
GO:0006526 arginine biosynthetic process 0.75% (1/133) 7.0 0.007791 0.035183
GO:0046112 nucleobase biosynthetic process 0.75% (1/133) 7.0 0.007791 0.035183
GO:0034755 iron ion transmembrane transport 0.75% (1/133) 7.0 0.007791 0.035183
GO:0009112 nucleobase metabolic process 0.75% (1/133) 7.0 0.007791 0.035183
GO:0140102 catalytic activity, acting on a rRNA 0.75% (1/133) 7.0 0.007791 0.035183
GO:0019238 cyclohydrolase activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0006826 iron ion transport 0.75% (1/133) 7.0 0.007791 0.035183
GO:0005381 iron ion transmembrane transporter activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0019136 deoxynucleoside kinase activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0019206 nucleoside kinase activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0004797 thymidine kinase activity 0.75% (1/133) 7.0 0.007791 0.035183
GO:0017076 purine nucleotide binding 11.28% (15/133) 1.04 0.006434 0.036805
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.5% (2/133) 3.87 0.00827 0.036954
GO:0072521 purine-containing compound metabolic process 2.26% (3/133) 2.86 0.00837 0.03702
GO:0005488 binding 29.32% (39/133) 0.55 0.007033 0.039184
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.5% (2/133) 4.0 0.006946 0.03921
GO:0019842 vitamin binding 2.26% (3/133) 2.94 0.007135 0.039245
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity 0.75% (1/133) 6.42 0.011664 0.046766
GO:0006529 asparagine biosynthetic process 0.75% (1/133) 6.42 0.011664 0.046766
GO:0046451 diaminopimelate metabolic process 0.75% (1/133) 6.42 0.011664 0.046766
GO:0009089 lysine biosynthetic process via diaminopimelate 0.75% (1/133) 6.42 0.011664 0.046766
GO:0006528 asparagine metabolic process 0.75% (1/133) 6.42 0.011664 0.046766
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 0.75% (1/133) 6.42 0.011664 0.046766
GO:0006553 lysine metabolic process 0.75% (1/133) 6.42 0.011664 0.046766
GO:0051499 D-aminoacyl-tRNA deacylase activity 0.75% (1/133) 6.42 0.011664 0.046766
GO:0009085 lysine biosynthetic process 0.75% (1/133) 6.42 0.011664 0.046766
GO:1901564 organonitrogen compound metabolic process 12.78% (17/133) 0.87 0.011849 0.047066
GO:0034660 ncRNA metabolic process 2.26% (3/133) 2.66 0.012247 0.0482
GO:0008168 methyltransferase activity 3.01% (4/133) 2.22 0.011024 0.048256
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.115 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_43 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_48 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_51 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_55 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_76 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_86 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_102 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_109 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_135 0.037 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_186 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_211 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_214 0.033 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_227 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_17 0.035 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_56 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.034 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_164 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_222 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_248 0.038 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_251 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_263 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_264 0.039 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_95 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_34 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_50 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.061 Archaeplastida Compare
Gingko biloba HCCA Cluster_171 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_281 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_319 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_327 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_335 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_4 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.035 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_65 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.039 Archaeplastida Compare
Zea mays HCCA Cluster_71 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_168 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.051 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.073 Archaeplastida Compare
Zea mays HCCA Cluster_208 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_232 0.045 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_294 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.045 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_41 0.05 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_77 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_83 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_114 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.066 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_170 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_175 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.093 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.076 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_53 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_120 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_25 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_51 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_82 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_88 0.044 Archaeplastida Compare
Picea abies HCCA Cluster_103 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_136 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_341 0.05 Archaeplastida Compare
Picea abies HCCA Cluster_354 0.045 Archaeplastida Compare
Picea abies HCCA Cluster_427 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_495 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_497 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_42 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_63 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_110 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.076 Archaeplastida Compare
Oryza sativa HCCA Cluster_172 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_188 0.039 Archaeplastida Compare
Oryza sativa HCCA Cluster_204 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_218 0.046 Archaeplastida Compare
Oryza sativa HCCA Cluster_243 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_248 0.036 Archaeplastida Compare
Oryza sativa HCCA Cluster_327 0.024 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_17 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_25 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_161 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_75 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_135 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_145 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_52 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.057 Archaeplastida Compare
Vitis vinifera HCCA Cluster_83 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_84 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_137 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_152 0.058 Archaeplastida Compare
Vitis vinifera HCCA Cluster_154 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_155 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.036 Archaeplastida Compare
Vitis vinifera HCCA Cluster_206 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_208 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.02 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_33 0.031 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_79 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_129 0.024 Archaeplastida Compare
Sequences (133) (download table)

InterPro Domains

GO Terms

Family Terms