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  5. Solyc03g115360.3.1

Solyc03g115360.3.1


Description : component RPS19 of SSU proteome


Gene families : OG0002393 (Archaeplastida) Phylogenetic Tree(s): OG0002393_tree ,
OG_05_0002411 (LandPlants) Phylogenetic Tree(s): OG_05_0002411_tree ,
OG_06_0002523 (SeedPlants) Phylogenetic Tree(s): OG_06_0002523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g115360.3.1
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00207750 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
AMTR_s00110p00069670 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
AT3G02080 No alias Ribosomal protein S19e family protein 0.37 Archaeplastida
AT5G15520 No alias Ribosomal protein S19e family protein 0.15 Archaeplastida
AT5G61170 No alias Ribosomal protein S19e family protein 0.47 Archaeplastida
Cpa|evm.model.tig00021017.6 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
Cre02.g106600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.39 Archaeplastida
GSVIVT01007908001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01012199001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 Archaeplastida
Gb_40460 No alias component RPS19 of SSU proteome 0.15 Archaeplastida
LOC_Os03g31090.1 No alias component RPS19 of SSU proteome 0.37 Archaeplastida
MA_10427917g0010 No alias component RPS19 of SSU proteome 0.28 Archaeplastida
MA_9301411g0010 No alias component RPS19 of SSU proteome 0.19 Archaeplastida
Mp1g27380.1 No alias component RPS19 of SSU proteome 0.44 Archaeplastida
Pp3c14_19640V3.1 No alias Ribosomal protein S19e family protein 0.33 Archaeplastida
Pp3c17_15200V3.1 No alias Ribosomal protein S19e family protein 0.22 Archaeplastida
Pp3c1_28780V3.1 No alias Ribosomal protein S19e family protein 0.4 Archaeplastida
Pp3c27_2780V3.1 No alias Ribosomal protein S19e family protein 0.06 Archaeplastida
Pp3c2_10060V3.1 No alias Ribosomal protein S19e family protein 0.37 Archaeplastida
Smo153225 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
Zm00001e002011_P001 No alias component RPS19 of SSU proteome 0.36 Archaeplastida
Zm00001e038053_P003 No alias component RPS19 of SSU proteome 0.39 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 7 140
No external refs found!