1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g119430.4.1

Solyc03g119430.4.1


Description : no hits & (original description: none)


Gene families : OG0006543 (Archaeplastida) Phylogenetic Tree(s): OG0006543_tree ,
OG_05_0008169 (LandPlants) Phylogenetic Tree(s): OG_05_0008169_tree ,
OG_06_0009845 (SeedPlants) Phylogenetic Tree(s): OG_06_0009845_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119430.4.1
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00037360 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 25 OS=Oryza... 0.02 Archaeplastida
AT3G47120 No alias RNA recognition motif (RRM)-containing protein 0.09 Archaeplastida
Cpa|evm.model.tig00020603.25 No alias Zinc finger CCCH domain-containing protein 42... 0.02 Archaeplastida
Cre06.g280550 No alias Zinc finger CCCH domain-containing protein 42... 0.02 Archaeplastida
GSVIVT01024759001 No alias Zinc finger CCCH domain-containing protein 25 OS=Oryza... 0.07 Archaeplastida
Mp8g06500.1 No alias Zinc finger CCCH domain-containing protein 25 OS=Oryza... 0.07 Archaeplastida
Pp3c19_15660V3.1 No alias RNA recognition motif (RRM)-containing protein 0.05 Archaeplastida
Zm00001e006232_P001 No alias Zinc finger CCCH domain-containing protein 25 OS=Oryza... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!