Coexpression cluster: Cluster_218 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000375 RNA splicing, via transesterification reactions 2.25% (2/89) 6.0 0.000438 0.011654
GO:0009966 regulation of signal transduction 2.25% (2/89) 6.0 0.000438 0.011654
GO:0010646 regulation of cell communication 2.25% (2/89) 6.0 0.000438 0.011654
GO:0023051 regulation of signaling 2.25% (2/89) 6.0 0.000438 0.011654
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.25% (2/89) 6.0 0.000438 0.011654
GO:0000398 mRNA splicing, via spliceosome 2.25% (2/89) 6.0 0.000438 0.011654
GO:0048583 regulation of response to stimulus 2.25% (2/89) 5.67 0.000693 0.016396
GO:0008380 RNA splicing 2.25% (2/89) 5.58 0.00079 0.016836
GO:0003723 RNA binding 5.62% (5/89) 2.7 0.001062 0.020567
GO:0005681 spliceosomal complex 2.25% (2/89) 7.0 0.0001 0.021406
GO:0044424 intracellular part 11.24% (10/89) 1.51 0.002686 0.027239
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 1.12% (1/89) 8.58 0.002612 0.027817
GO:0032784 regulation of DNA-templated transcription, elongation 1.12% (1/89) 8.58 0.002612 0.027817
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 1.12% (1/89) 8.58 0.002612 0.027817
GO:0090501 RNA phosphodiester bond hydrolysis 1.12% (1/89) 8.58 0.002612 0.027817
GO:0032786 positive regulation of DNA-templated transcription, elongation 1.12% (1/89) 8.58 0.002612 0.027817
GO:0000469 cleavage involved in rRNA processing 1.12% (1/89) 8.58 0.002612 0.027817
GO:0090305 nucleic acid phosphodiester bond hydrolysis 1.12% (1/89) 8.58 0.002612 0.027817
GO:0045944 positive regulation of transcription by RNA polymerase II 1.12% (1/89) 8.58 0.002612 0.027817
GO:1990904 ribonucleoprotein complex 5.62% (5/89) 2.36 0.002996 0.029004
GO:0003743 translation initiation factor activity 2.25% (2/89) 4.58 0.00318 0.029445
GO:0044464 cell part 11.24% (10/89) 1.45 0.003518 0.031222
GO:1903508 positive regulation of nucleic acid-templated transcription 1.12% (1/89) 7.58 0.005217 0.034726
GO:0000776 kinetochore 1.12% (1/89) 7.58 0.005217 0.034726
GO:0031262 Ndc80 complex 1.12% (1/89) 7.58 0.005217 0.034726
GO:0045893 positive regulation of transcription, DNA-templated 1.12% (1/89) 7.58 0.005217 0.034726
GO:1902680 positive regulation of RNA biosynthetic process 1.12% (1/89) 7.58 0.005217 0.034726
GO:0051254 positive regulation of RNA metabolic process 1.12% (1/89) 7.58 0.005217 0.034726
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 1.12% (1/89) 7.58 0.005217 0.034726
GO:0016070 RNA metabolic process 5.62% (5/89) 2.24 0.004246 0.036178
GO:0008135 translation factor activity, RNA binding 3.37% (3/89) 4.41 0.000388 0.041318
GO:0034641 cellular nitrogen compound metabolic process 10.11% (9/89) 1.64 0.002412 0.042817
GO:0006397 mRNA processing 2.25% (2/89) 4.0 0.007038 0.045426
GO:0003725 double-stranded RNA binding 1.12% (1/89) 7.0 0.007815 0.048961
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_11 0.03 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_23 0.045 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_133 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_191 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_211 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_213 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_230 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_50 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_89 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_113 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_120 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_187 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_270 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_71 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_83 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_29 0.027 Archaeplastida Compare
Gingko biloba HCCA Cluster_241 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_248 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_323 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_52 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.048 Archaeplastida Compare
Zea mays HCCA Cluster_108 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_270 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_281 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_296 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_128 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_155 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_156 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_166 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_81 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_104 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_128 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_158 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_259 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_288 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_360 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_402 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_531 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_77 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_96 0.056 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_176 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_82 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_175 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_8 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_22 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_66 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_114 0.035 Archaeplastida Compare
Vitis vinifera HCCA Cluster_142 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_192 0.035 Archaeplastida Compare
Sequences (89) (download table)

InterPro Domains

GO Terms

Family Terms