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  5. Solyc03g119460.4.1

Solyc03g119460.4.1


Description : component ESP1 of Cleavage Stimulatory Factor (CstF) complex


Gene families : OG0002124 (Archaeplastida) Phylogenetic Tree(s): OG0002124_tree ,
OG_05_0005707 (LandPlants) Phylogenetic Tree(s): OG_05_0005707_tree ,
OG_06_0004804 (SeedPlants) Phylogenetic Tree(s): OG_06_0004804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119460.4.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021433.15 No alias No description available 0.03 Archaeplastida
Cre01.g024200 No alias RNA processing.RNA 3-end polyadenylation.Cleavage... 0.02 Archaeplastida
GSVIVT01008293001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage... 0.05 Archaeplastida
GSVIVT01008294001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage... 0.04 Archaeplastida
Gb_06606 No alias component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.04 Archaeplastida
Gb_13366 No alias component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.03 Archaeplastida
LOC_Os11g07490.1 No alias component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.02 Archaeplastida
MA_40013g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g14470.1 No alias component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.05 Archaeplastida
Pp3c14_13370V3.1 No alias cleavage stimulating factor 64 0.02 Archaeplastida
Zm00001e024521_P003 No alias component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR025742 CSTF2_hinge 38 99
IPR026896 CSTF_C 288 321
No external refs found!