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  5. AMTR_s00024p00200570

AMTR_s00024p00200570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.176

Description : RNA biosynthesis.transcriptional activation.Alfin-like transcription factor


Gene families : OG0000328 (Archaeplastida) Phylogenetic Tree(s): OG0000328_tree ,
OG_05_0000344 (LandPlants) Phylogenetic Tree(s): OG_05_0000344_tree ,
OG_06_0000605 (SeedPlants) Phylogenetic Tree(s): OG_06_0000605_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00200570
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT3G42790 AL3 alfin-like 3 0.03 Archaeplastida
Gb_11603 No alias Alfin-like transcription factor 0.03 Archaeplastida
LOC_Os11g14010.1 No alias Alfin-like transcription factor 0.04 Archaeplastida
Mp1g23460.1 No alias Alfin-like transcription factor 0.02 Archaeplastida
Zm00001e014851_P004 No alias Alfin-like transcription factor 0.03 Archaeplastida
Zm00001e021294_P001 No alias Alfin-like transcription factor 0.04 Archaeplastida
Zm00001e028587_P002 No alias Alfin-like transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004520 endodeoxyribonuclease activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR021998 Alfin 11 147
IPR019787 Znf_PHD-finger 203 251
No external refs found!