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  5. Solyc03g121330.3.1

Solyc03g121330.3.1


Description : component RPL28 of LSU proteome component


Gene families : OG0003075 (Archaeplastida) Phylogenetic Tree(s): OG0003075_tree ,
OG_05_0003467 (LandPlants) Phylogenetic Tree(s): OG_05_0003467_tree ,
OG_06_0004175 (SeedPlants) Phylogenetic Tree(s): OG_06_0004175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g121330.3.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00210210 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AT2G19730 No alias Ribosomal L28e protein family 0.53 Archaeplastida
AT4G29410 No alias Ribosomal L28e protein family 0.47 Archaeplastida
Cpa|evm.model.tig00020710.93 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 Archaeplastida
Cre11.g467578 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
GSVIVT01016895001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 Archaeplastida
GSVIVT01035350001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Gb_38783 No alias component RPL28 of LSU proteome component 0.18 Archaeplastida
LOC_Os01g51020.1 No alias component RPL28 of LSU proteome component 0.03 Archaeplastida
LOC_Os02g57540.1 No alias component RPL28 of LSU proteome component 0.38 Archaeplastida
LOC_Os05g46430.1 No alias component RPL28 of LSU proteome component 0.31 Archaeplastida
MA_10428490g0010 No alias component RPL28 of LSU proteome component 0.14 Archaeplastida
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.41 Archaeplastida
Pp3c14_10480V3.1 No alias Ribosomal L28e protein family 0.36 Archaeplastida
Pp3c17_14060V3.1 No alias Ribosomal L28e protein family 0.4 Archaeplastida
Pp3c1_29070V3.1 No alias Ribosomal L28e protein family 0.22 Archaeplastida
Pp3c2_6100V3.1 No alias Ribosomal L28e protein family 0.25 Archaeplastida
Smo164298 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Zm00001e026410_P001 No alias component RPL28 of LSU proteome component 0.28 Archaeplastida
Zm00001e032283_P002 No alias component RPL28 of LSU proteome component 0.43 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 8 128
No external refs found!