Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.211
Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS3 component
Gene families : OG0002305 (Archaeplastida) Phylogenetic Tree(s): OG0002305_tree ,
OG_05_0001961 (LandPlants) Phylogenetic Tree(s): OG_05_0001961_tree ,
OG_06_0002250 (SeedPlants) Phylogenetic Tree(s): OG_06_0002250_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00024p00219330 | |
Cluster | HCCA: Cluster_50 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G31610 | No alias | Ribosomal protein S3 family protein | 0.05 | Archaeplastida | |
AT3G53870 | No alias | Ribosomal protein S3 family protein | 0.09 | Archaeplastida | |
AT5G35530 | No alias | Ribosomal protein S3 family protein | 0.3 | Archaeplastida | |
Cpa|evm.model.tig00021462.41 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.25 | Archaeplastida | |
Cre02.g102250 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.23 | Archaeplastida | |
GSVIVT01015110001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.17 | Archaeplastida | |
GSVIVT01016775001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.18 | Archaeplastida | |
GSVIVT01035451001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.12 | Archaeplastida | |
Gb_26536 | No alias | component RPS3 of SSU proteome | 0.14 | Archaeplastida | |
LOC_Os03g38000.1 | No alias | component RPS3 of SSU proteome | 0.23 | Archaeplastida | |
LOC_Os07g41750.1 | No alias | component RPS3 of SSU proteome | 0.15 | Archaeplastida | |
MA_10436283g0010 | No alias | component RPS3 of SSU proteome | 0.13 | Archaeplastida | |
MA_120861g0010 | No alias | component RPS3 of SSU proteome | 0.17 | Archaeplastida | |
Mp1g16730.1 | No alias | component RPS3 of SSU proteome | 0.32 | Archaeplastida | |
Pp3c11_22640V3.1 | No alias | Ribosomal protein S3 family protein | 0.23 | Archaeplastida | |
Pp3c15_21360V3.1 | No alias | Ribosomal protein S3 family protein | 0.16 | Archaeplastida | |
Pp3c16_3760V3.1 | No alias | Ribosomal protein S3 family protein | 0.14 | Archaeplastida | |
Pp3c5_5330V3.1 | No alias | Ribosomal protein S3 family protein | 0.2 | Archaeplastida | |
Pp3c7_2620V3.1 | No alias | Ribosomal protein S3 family protein | 0.19 | Archaeplastida | |
Pp3c9_12170V3.1 | No alias | Ribosomal protein S3 family protein | 0.23 | Archaeplastida | |
Smo270414 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.12 | Archaeplastida | |
Smo270666 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | Archaeplastida | |
Smo438700 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.09 | Archaeplastida | |
Solyc07g041310.3.1 | No alias | component RPS3 of SSU proteome | 0.19 | Archaeplastida | |
Solyc08g061843.1.1 | No alias | component RPS3 of SSU proteome | 0.24 | Archaeplastida | |
Zm00001e021687_P001 | No alias | component RPS3 of SSU proteome | 0.28 | Archaeplastida | |
Zm00001e040177_P002 | No alias | component RPS3 of SSU proteome | 0.28 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005622 | intracellular | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Neighborhood |
MF | GO:0000179 | rRNA (adenine-N6,N6-)-dimethyltransferase activity | IEP | Neighborhood |
CC | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0005048 | signal sequence binding | IEP | Neighborhood |
CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | Neighborhood |
CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006413 | translational initiation | IEP | Neighborhood |
BP | GO:0006457 | protein folding | IEP | Neighborhood |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Neighborhood |
BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
CC | GO:0015934 | large ribosomal subunit | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016433 | rRNA (adenine) methyltransferase activity | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Neighborhood |
MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
MF | GO:0042277 | peptide binding | IEP | Neighborhood |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Neighborhood |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
CC | GO:0044391 | ribosomal subunit | IEP | Neighborhood |
BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Neighborhood |
CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Neighborhood |
MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
No external refs found! |