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  5. AMTR_s00024p00219730

AMTR_s00024p00219730 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.212

Description : E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana


Gene families : OG0001557 (Archaeplastida) Phylogenetic Tree(s): OG0001557_tree ,
OG_05_0007620 (LandPlants) Phylogenetic Tree(s): OG_05_0007620_tree ,
OG_06_0012005 (SeedPlants) Phylogenetic Tree(s): OG_06_0012005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00219730
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Mp3g23390.1 No alias component MPE1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Pp3c1_38750V3.1 No alias DWNN domain, a CCHC-type zinc finger 0.03 Archaeplastida
Zm00001e004737_P002 No alias component MPE1 of Cleavage and Polyadenylation... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004181 metallocarboxypeptidase activity IEP Neighborhood
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
MF GO:0008235 metalloexopeptidase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030151 molybdenum ion binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 481 497
IPR014891 DWNN_domain 4 76
No external refs found!