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  5. AMTR_s00024p00228870

AMTR_s00024p00228870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.233

Description : RNA biosynthesis.transcriptional activation.GRF-GIF transcriptional complex.GRF transcription factor component


Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0000223 (LandPlants) Phylogenetic Tree(s): OG_05_0000223_tree ,
OG_06_0000402 (SeedPlants) Phylogenetic Tree(s): OG_06_0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00228870
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
AT3G13960 GRF5, AtGRF5 growth-regulating factor 5 0.03 Archaeplastida
AT4G24150 AtGRF8, GRF8 growth-regulating factor 8 0.04 Archaeplastida
GSVIVT01015095001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
GSVIVT01016762001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.07 Archaeplastida
GSVIVT01019667001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
GSVIVT01033800001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 Archaeplastida
LOC_Os02g53690.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
LOC_Os11g35030.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Smo412762 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
Solyc03g082430.1.1 No alias component GRF of GRF-GIF transcriptional complex 0.05 Archaeplastida
Solyc07g041640.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Solyc10g083510.2.1 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Zm00001e012104_P002 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Zm00001e015436_P001 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Zm00001e030774_P001 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Zm00001e036224_P001 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014977 WRC_dom 8 53
No external refs found!