1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g008870.3.1

Solyc04g008870.3.1


Description : transcription factor (MYB-related)


Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0000498 (LandPlants) Phylogenetic Tree(s): OG_05_0000498_tree ,
OG_06_0000376 (SeedPlants) Phylogenetic Tree(s): OG_06_0000376_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008870.3.1
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00096080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT2G18328 ATRL4, RL4 RAD-like 4 0.03 Archaeplastida
AT4G36570 ATRL3, RL3 RAD-like 3 0.05 Archaeplastida
AT5G05790 No alias Duplicated homeodomain-like superfamily protein 0.05 Archaeplastida
AT5G23650 No alias Homeodomain-like transcriptional regulator 0.04 Archaeplastida
AT5G58900 No alias Homeodomain-like transcriptional regulator 0.03 Archaeplastida
AT5G61620 No alias myb-like transcription factor family protein 0.03 Archaeplastida
GSVIVT01009723001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01013684001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01014754001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01016370001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01022310001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01034001001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
LOC_Os01g04930.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
LOC_Os01g64360.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os03g62100.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
LOC_Os04g27410.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os06g07640.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
LOC_Os08g05510.1 No alias transcription factor (MYB-related) 0.01 Archaeplastida
MA_209399g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_41803g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_6326342g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Solyc02g082390.1.1 No alias transcription factor (MYB-related) 0.07 Archaeplastida
Solyc04g150172.1.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Solyc05g052610.3.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Solyc12g089170.3.1 No alias transcription factor (MYB-related) 0.06 Archaeplastida
Zm00001e017388_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e019254_P001 No alias transcription factor (MYB-related) 0.05 Archaeplastida
Zm00001e021760_P003 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Zm00001e025446_P001 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Zm00001e025946_P002 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e027835_P005 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Zm00001e032519_P001 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Zm00001e042486_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 122 166
No external refs found!