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  5. Solyc04g008900.4.1

Solyc04g008900.4.1


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 114.0)


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0014599 (SeedPlants) Phylogenetic Tree(s): OG_06_0014599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008900.4.1
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00023p00172000 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT3G50170 No alias Plant protein of unknown function (DUF247) 0.07 Archaeplastida
GSVIVT01033984001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_36108 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 Archaeplastida
Solyc01g057260.4.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Solyc04g008920.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e024232_P001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 45 433
No external refs found!