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  5. Solyc04g008920.1.1

Solyc04g008920.1.1


Description : no hits & (original description: none)


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0014599 (SeedPlants) Phylogenetic Tree(s): OG_06_0014599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008920.1.1
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00023p00168910 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
GSVIVT01014791001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01033984001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01035820001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os06g37280.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os11g33394.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10434321g0020 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_9718623g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc04g008900.4.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc11g044380.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 72 199
No external refs found!