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  5. Solyc04g009180.3.1

Solyc04g009180.3.1


Description : transcription factor (TCP). CHE circadian clock repression factor


Gene families : OG0000415 (Archaeplastida) Phylogenetic Tree(s): OG0000415_tree ,
OG_05_0000215 (LandPlants) Phylogenetic Tree(s): OG_05_0000215_tree ,
OG_06_0000299 (SeedPlants) Phylogenetic Tree(s): OG_06_0000299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009180.3.1
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00081210 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
AMTR_s00069p00171910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
AT2G45680 No alias TCP family transcription factor 0.04 Archaeplastida
AT3G27010 AT-TCP20, TCP20,... TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family... 0.03 Archaeplastida
AT3G45150 TCP16 TCP domain protein 16 0.05 Archaeplastida
GSVIVT01020011001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
LOC_Os11g07460.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os12g07480.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e015209_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.03 Archaeplastida
Zm00001e015821_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e023066_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.04 Archaeplastida
Zm00001e023897_P001 No alias transcription factor (TCP) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 39 129
No external refs found!