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  5. Solyc04g014260.2.1

Solyc04g014260.2.1


Description : transcription factor (zf-HD)


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g014260.2.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00027320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AMTR_s00099p00145100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.04 Archaeplastida
AT1G74660 MIF1 mini zinc finger 1 0.02 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.03 Archaeplastida
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.05 Archaeplastida
AT3G28917 MIF2 mini zinc finger 2 0.04 Archaeplastida
AT3G50890 ZHD7, HB28, AtHB28 homeobox protein 28 0.03 Archaeplastida
AT4G24660 ATHB22, MEE68, ZHD2, HB22 homeobox protein 22 0.01 Archaeplastida
AT5G42780 HB27, ZHD13, AtHB27 homeobox protein 27 0.04 Archaeplastida
AT5G65410 ZHD1, ZFHD2, HB25, ATHB25 homeobox protein 25 0.03 Archaeplastida
GSVIVT01000250001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01003614001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01012772001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_15163 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Gb_18045 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Gb_37393 No alias transcription factor (zf-HD) 0.02 Archaeplastida
LOC_Os02g47770.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
LOC_Os04g35500.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
LOC_Os09g29130.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os12g10630.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_171206g0010 No alias transcription factor (zf-HD) 0.04 Archaeplastida
MA_173815g0010 No alias transcription factor (zf-HD) 0.04 Archaeplastida
MA_19630g0020 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_19630g0030 No alias transcription factor (zf-HD) 0.04 Archaeplastida
MA_461761g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Mp8g08190.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Pp3c1_15290V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Pp3c7_15000V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Solyc04g074990.3.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e008082_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e009830_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e015590_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e018364_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e021292_P003 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e022486_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e023331_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e034119_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e034407_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 56 105
No external refs found!