1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g015180.3.1

Solyc04g015180.3.1


Description : subunit 4 of RNA polymerase


Gene families : OG0002618 (Archaeplastida) Phylogenetic Tree(s): OG0002618_tree ,
OG_05_0002545 (LandPlants) Phylogenetic Tree(s): OG_05_0002545_tree ,
OG_06_0002264 (SeedPlants) Phylogenetic Tree(s): OG_06_0002264_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g015180.3.1
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.37 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 Archaeplastida
GSVIVT01003467001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
LOC_Os02g49150.2 No alias subunit 4 of RNA polymerase 0.03 Archaeplastida
MA_10428570g0010 No alias subunit 4 of RNA polymerase 0.03 Archaeplastida
Zm00001e023396_P002 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006480 N-terminal protein amino acid methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0031365 N-terminal protein amino acid modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!