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  5. AMTR_s00024p00240360

AMTR_s00024p00240360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.279

Description : Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0010487 (LandPlants) Phylogenetic Tree(s): OG_05_0010487_tree ,
OG_06_0009618 (SeedPlants) Phylogenetic Tree(s): OG_06_0009618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00240360
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00221p00021110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
AT1G80150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.02 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018196 peptidyl-asparagine modification IEP Neighborhood
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 431 452
IPR002885 Pentatricopeptide_repeat 142 170
IPR002885 Pentatricopeptide_repeat 361 406
IPR002885 Pentatricopeptide_repeat 218 266
IPR002885 Pentatricopeptide_repeat 289 337
No external refs found!