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  5. Solyc04g049770.4.1

Solyc04g049770.4.1


Description : component UPF2 of RNA quality control Exon Junction complex


Gene families : OG0003758 (Archaeplastida) Phylogenetic Tree(s): OG0003758_tree ,
OG_05_0006352 (LandPlants) Phylogenetic Tree(s): OG_05_0006352_tree ,
OG_06_0006889 (SeedPlants) Phylogenetic Tree(s): OG_06_0006889_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g049770.4.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.06 Archaeplastida
AT2G39260 No alias binding;RNA binding 0.11 Archaeplastida
Cpa|evm.model.tig00022080.18 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.08 Archaeplastida
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.07 Archaeplastida
LOC_Os02g42040.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.04 Archaeplastida
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Pp3c11_19990V3.1 No alias binding;RNA binding 0.08 Archaeplastida
Smo440923 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
Zm00001e023044_P004 No alias component UPF2 of RNA quality control Exon Junction complex 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007193 Up-fram_suppressor-2 465 599
IPR003890 MIF4G-like_typ-3 1 133
IPR003890 MIF4G-like_typ-3 151 345
No external refs found!