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  5. Solyc04g050760.4.1

Solyc04g050760.4.1


Description : protein factor U11-48K of U11 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0008220 (Archaeplastida) Phylogenetic Tree(s): OG0008220_tree ,
OG_05_0008738 (LandPlants) Phylogenetic Tree(s): OG_05_0008738_tree ,
OG_06_0010780 (SeedPlants) Phylogenetic Tree(s): OG_06_0010780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g050760.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00178860 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U12-type-intron-specific... 0.04 Archaeplastida
GSVIVT01026370001 No alias RNA processing.RNA splicing.U12-type-intron-specific... 0.03 Archaeplastida
Zm00001e008466_P001 No alias protein factor U11-48K of U11 small nuclear... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022776 TRM13/UPF0224_CHHC_Znf_dom 86 110
No external refs found!