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  5. AMTR_s00024p00252900

AMTR_s00024p00252900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.352

Description : Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.MPH2 acclimation factor


Gene families : OG0006774 (Archaeplastida) Phylogenetic Tree(s): OG0006774_tree ,
OG_05_0006039 (LandPlants) Phylogenetic Tree(s): OG_05_0006039_tree ,
OG_06_0007487 (SeedPlants) Phylogenetic Tree(s): OG_06_0007487_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00252900
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT4G02530 No alias chloroplast thylakoid lumen protein 0.12 Archaeplastida
Cre06.g256250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
GSVIVT01015564001 No alias Photosynthesis.photophosphorylation.photosystem... 0.1 Archaeplastida
Gb_39226 No alias photosynthetic acclimation MPH2 acclimation factor 0.05 Archaeplastida
Gb_41224 No alias photosynthetic acclimation MPH2 acclimation factor 0.07 Archaeplastida
LOC_Os06g49160.1 No alias photosynthetic acclimation MPH2 acclimation factor 0.1 Archaeplastida
MA_4765g0010 No alias photosynthetic acclimation MPH2 acclimation factor 0.08 Archaeplastida
MA_58974g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g01620.1 No alias photosynthetic acclimation MPH2 acclimation factor 0.1 Archaeplastida
Pp3c24_6770V3.1 No alias chloroplast thylakoid lumen protein 0.03 Archaeplastida
Pp3c8_15020V3.1 No alias chloroplast thylakoid lumen protein 0.05 Archaeplastida
Smo412250 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Solyc12g009600.2.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e013209_P001 No alias photosynthetic acclimation MPH2 acclimation factor 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!