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  5. Solyc04g054800.3.1

Solyc04g054800.3.1


Description : Protein UPSTREAM OF FLC OS=Arabidopsis thaliana (sp|q9lx14|ufc_arath : 88.2)


Gene families : OG0001036 (Archaeplastida) Phylogenetic Tree(s): OG0001036_tree ,
OG_05_0000624 (LandPlants) Phylogenetic Tree(s): OG_05_0000624_tree ,
OG_06_0086387 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g054800.3.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00133150 evm_27.TU.AmTr_v1... Protein UPSTREAM OF FLC OS=Arabidopsis thaliana 0.03 Archaeplastida
AT5G10150 No alias Domain of unknown function (DUF966) 0.05 Archaeplastida
AT5G59790 No alias Domain of unknown function (DUF966) 0.04 Archaeplastida
GSVIVT01031468001 No alias No description available 0.04 Archaeplastida
GSVIVT01031469001 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os01g62200.1 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os03g09200.1 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os08g44760.1 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10435302g0010 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_40202g0010 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e000820_P002 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e003892_P002 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e005317_P002 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e012257_P001 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010369 DUF966 38 232
No external refs found!