1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g056440.3.1

Solyc04g056440.3.1


Description : no hits & (original description: none)


Gene families : OG0001163 (Archaeplastida) Phylogenetic Tree(s): OG0001163_tree ,
OG_05_0001150 (LandPlants) Phylogenetic Tree(s): OG_05_0001150_tree ,
OG_06_0000738 (SeedPlants) Phylogenetic Tree(s): OG_06_0000738_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g056440.3.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00185740 evm_27.TU.AmTr_v1... Probable (S)-tetrahydroprotoberberine... 0.03 Archaeplastida
AT3G23460 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.06 Archaeplastida
AT3G23470 No alias Cyclopropane-fatty-acyl-phospholipid synthase 0.05 Archaeplastida
AT3G23510 No alias Cyclopropane-fatty-acyl-phospholipid synthase 0.06 Archaeplastida
GSVIVT01027886001 No alias Probable (S)-tetrahydroprotoberberine... 0.06 Archaeplastida
LOC_Os12g16640.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10426263g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10430341g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_212851g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_719785g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g045150.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!