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Description : Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana (sp|q9fmg4|sc35_arath : 174.0)
Gene families : OG0001859 (Archaeplastida) Phylogenetic Tree(s): OG0001859_tree ,
OG_05_0001512 (LandPlants) Phylogenetic Tree(s): OG_05_0001512_tree ,
OG_06_0001418 (SeedPlants) Phylogenetic Tree(s): OG_06_0001418_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc04g074040.3.1 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G64200 | SC35, ATSC35, At-SC35 | ortholog of human splicing factor SC35 | 0.04 | Archaeplastida | |
| MA_10426661g0020 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.05 | Archaeplastida | |
| MA_98891g0010 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
| Mp3g01600.1 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.02 | Archaeplastida | |
| Zm00001e024321_P003 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.01 | Archaeplastida | |
| Zm00001e035587_P001 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| MF | GO:0003713 | transcription coactivator activity | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| MF | GO:0004455 | ketol-acid reductoisomerase activity | IEP | Neighborhood |
| CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
| BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
| BP | GO:0016458 | gene silencing | IEP | Neighborhood |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
| BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 18 | 87 |
| No external refs found! |