Solyc04g074910.3.1

Description : component RPS21 of SSU proteome

Gene families : OG0002316 (Archaeplastida) Phylogenetic Tree(s): OG0002316_tree ,
OG_05_0003260 (LandPlants) Phylogenetic Tree(s): OG_05_0003260_tree ,
OG_06_0003911 (SeedPlants) Phylogenetic Tree(s): OG_06_0003911_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g074910.3.1
Cluster	HCCA: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00200410	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AT3G53890	No alias	Ribosomal protein S21e	0.1	Archaeplastida
AT5G27700	No alias	Ribosomal protein S21e	0.15	Archaeplastida
Cpa\|evm.model.tig00020780.14	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Cre03.g203450	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
GSVIVT01017756001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	Archaeplastida
GSVIVT01031151001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
Gb_27652	No alias	component RPS21 of SSU proteome	0.13	Archaeplastida
Gb_35516	No alias	component RPS21 of SSU proteome	0.16	Archaeplastida
LOC_Os03g46490.1	No alias	component RPS21 of SSU proteome	0.09	Archaeplastida
MA_21647g0010	No alias	component RPS21 of SSU proteome	0.03	Archaeplastida
MA_73657g0010	No alias	component RPS21 of SSU proteome	0.06	Archaeplastida
Mp4g22150.1	No alias	component RPS21 of SSU proteome	0.09	Archaeplastida
Pp3c12_25030V3.1	No alias	Ribosomal protein S21e	0.16	Archaeplastida
Pp3c24_8160V3.1	No alias	Ribosomal protein S21e	0.07	Archaeplastida
Pp3c26_3000V3.1	No alias	Ribosomal protein S21e	0.09	Archaeplastida
Pp3c4_3220V3.1	No alias	Ribosomal protein S21e	0.12	Archaeplastida
Smo271040	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Zm00001e001637_P002	No alias	component RPS21 of SSU proteome	0.15	Archaeplastida
Zm00001e011684_P002	No alias	component RPS21 of SSU proteome	0.14	Archaeplastida
Zm00001e031393_P002	No alias	component RPS21 of SSU proteome	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
CC	GO:0000786	nucleosome	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001931	Ribosomal_S21e	1	76

External Links

No external refs found!

Solyc04g074910.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation