Solyc04g076280.4.1

Description : MADS-box protein SVP OS=Arabidopsis thaliana (sp|q9fvc1|svp_arath : 103.0)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0004419 (LandPlants) Phylogenetic Tree(s): OG_05_0004419_tree ,
OG_06_0002756 (SeedPlants) Phylogenetic Tree(s): OG_06_0002756_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g076280.4.1
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00103080	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00047p00190220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AT2G26320	AGL33	AGAMOUS-like 33	0.03	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G61120	AGL13	AGAMOUS-like 13	0.04	Archaeplastida
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.05	Archaeplastida
GSVIVT01010218001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01036549001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.1	Archaeplastida
Gb_03807	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Gb_05128	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_15398	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Gb_41550	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os01g66290.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g36924.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
LOC_Os03g03100.1	No alias	transcription factor (MADS/AGL)	0.08	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os05g11380.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os05g11414.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g11330.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
LOC_Os08g41950.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_101463g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10256834g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_10289256g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10432817g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_126898g0010	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
MA_133455g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_138440g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_141872g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_15122g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_16120g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_19007g0010	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
MA_206542g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_254338g0010	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
MA_35712g0010	No alias	transcription factor (MADS/AGL)	0.09	Archaeplastida
MA_45349g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_57493g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.03	Archaeplastida
MA_69370g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_7858089g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_8748850g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_9382435g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_95674g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c12_22500V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
Pp3c17_5920V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc03g006830.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e014926_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e018811_P001	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Zm00001e022819_P002	No alias	transcription factor (MADS/AGL)	0.1	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e032487_P001	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e035509_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e036159_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	57	132

External Links

No external refs found!

Solyc04g076280.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation