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  5. Solyc04g078470.3.1

Solyc04g078470.3.1


Description : cyclin (CYCD)


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0007997 (LandPlants) Phylogenetic Tree(s): OG_05_0007997_tree ,
OG_06_0005800 (SeedPlants) Phylogenetic Tree(s): OG_06_0005800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078470.3.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00135p00066200 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
AMTR_s00164p00026810 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
AMTR_s00190p00017930 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.05 Archaeplastida
AT5G67260 CYCD3;2 CYCLIN D3;2 0.07 Archaeplastida
GSVIVT01000226001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01003674001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.05 Archaeplastida
GSVIVT01009432001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.09 Archaeplastida
GSVIVT01020167001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
Gb_03361 No alias cyclin (CYCD) 0.07 Archaeplastida
LOC_Os03g10650.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os03g27420.1 No alias cyclin (CYCD) 0.02 Archaeplastida
LOC_Os03g42070.1 No alias cyclin (CYCD) 0.06 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.09 Archaeplastida
LOC_Os09g21450.1 No alias cyclin (CYCD) 0.04 Archaeplastida
MA_10429174g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10429174g0030 No alias cyclin (CYCD) 0.02 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.02 Archaeplastida
MA_559426g0020 No alias cyclin (CYCD) 0.02 Archaeplastida
Zm00001e003835_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e035575_P002 No alias cyclin (CYCD) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 53 182
IPR004367 Cyclin_C-dom 184 280
No external refs found!