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  5. Solyc04g079970.3.1

Solyc04g079970.3.1


Description : RUB conjugation E2 protein (RCE1)


Gene families : OG0001800 (Archaeplastida) Phylogenetic Tree(s): OG0001800_tree ,
OG_05_0002301 (LandPlants) Phylogenetic Tree(s): OG_05_0002301_tree ,
OG_06_0003058 (SeedPlants) Phylogenetic Tree(s): OG_06_0003058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g079970.3.1
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT2G18600 No alias Ubiquitin-conjugating enzyme family protein 0.02 Archaeplastida
Cre08.g370850 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 Archaeplastida
GSVIVT01019018001 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 Archaeplastida
GSVIVT01031919001 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.11 Archaeplastida
Gb_16788 No alias RUB conjugation E2 protein (RCE1) 0.03 Archaeplastida
Mp2g16580.1 No alias RUB conjugation E2 protein (RCE1) 0.07 Archaeplastida
Pp3c4_29910V3.1 No alias Ubiquitin-conjugating enzyme family protein 0.04 Archaeplastida
Smo152152 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 Archaeplastida
Smo271739 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.02 Archaeplastida
Zm00001e013173_P001 No alias RUB conjugation E2 protein (RCE1) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 33 168
No external refs found!