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  5. Solyc04g080530.3.1

Solyc04g080530.3.1


Description : pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0004723 (SeedPlants) Phylogenetic Tree(s): OG_06_0004723_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g080530.3.1
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.04 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.05 Archaeplastida
MA_19196g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Solyc09g091730.4.1 No alias pectin methylesterase 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 42 310
No external refs found!