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  5. Solyc04g082430.3.1

Solyc04g082430.3.1


Description : cyclin (CYCB)


Gene families : OG0000492 (Archaeplastida) Phylogenetic Tree(s): OG0000492_tree ,
OG_05_0000357 (LandPlants) Phylogenetic Tree(s): OG_05_0000357_tree ,
OG_06_0002131 (SeedPlants) Phylogenetic Tree(s): OG_06_0002131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g082430.3.1
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00032080 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.07 Archaeplastida
AMTR_s00101p00131830 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.03 Archaeplastida
AT1G20610 CYCB2;3 Cyclin B2;3 0.05 Archaeplastida
AT1G76310 CYCB2;4 CYCLIN B2;4 0.07 Archaeplastida
AT2G17620 CYCB2;1 Cyclin B2;1 0.04 Archaeplastida
AT2G26760 CYCB1;4 Cyclin B1;4 0.05 Archaeplastida
AT3G11520 CYCB1;3, CYC2 CYCLIN B1;3 0.05 Archaeplastida
AT4G35620 CYCB2;2 Cyclin B2;2 0.05 Archaeplastida
Cpa|evm.model.tig00000769.38 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.01 Archaeplastida
Cre08.g370401 No alias Cyclin-B2-2 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01009895001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.07 Archaeplastida
GSVIVT01025781001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.07 Archaeplastida
GSVIVT01032782001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.05 Archaeplastida
GSVIVT01036739001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.05 Archaeplastida
GSVIVT01037397001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.01 Archaeplastida
Gb_01761 No alias cyclin (CYCB) 0.03 Archaeplastida
Gb_03506 No alias cyclin (CYCB) 0.03 Archaeplastida
Gb_10664 No alias cyclin (CYCB) 0.03 Archaeplastida
Gb_27795 No alias G2/mitotic-specific cyclin-1 OS=Antirrhinum majus... 0.03 Archaeplastida
LOC_Os01g59120.1 No alias cyclin (CYCB) 0.1 Archaeplastida
LOC_Os04g47580.1 No alias cyclin (CYCB) 0.08 Archaeplastida
LOC_Os05g41390.1 No alias cyclin (CYCB) 0.08 Archaeplastida
LOC_Os06g51110.2 No alias cyclin (CYCB) 0.09 Archaeplastida
MA_10428837g0030 No alias cyclin (CYCB) 0.02 Archaeplastida
MA_10433093g0020 No alias Cyclin-B2-1 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
MA_19215g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_311439g0010 No alias cyclin (CYCB) 0.03 Archaeplastida
MA_738195g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g00590.1 No alias cyclin (CYCB) 0.02 Archaeplastida
Mp5g10030.1 No alias cyclin (CYCB) 0.04 Archaeplastida
Pp3c15_21520V3.1 No alias CYCLIN B2;4 0.04 Archaeplastida
Pp3c9_18910V3.1 No alias CYCLIN B2;4 0.04 Archaeplastida
Smo230742 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.03 Archaeplastida
Solyc01g009040.4.1 No alias cyclin (CYCB) 0.06 Archaeplastida
Solyc03g032190.3.1 No alias cyclin (CYCB) 0.04 Archaeplastida
Solyc06g073610.3.1 No alias cyclin (CYCB) 0.02 Archaeplastida
Zm00001e007244_P001 No alias cyclin (CYCB) 0.05 Archaeplastida
Zm00001e025467_P001 No alias Cyclin-B1-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e027336_P001 No alias cyclin (CYCB) 0.03 Archaeplastida
Zm00001e028899_P002 No alias cyclin (CYCB) 0.05 Archaeplastida
Zm00001e030146_P001 No alias cyclin (CYCB) 0.08 Archaeplastida
Zm00001e041485_P001 No alias cyclin (CYCB) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 315 427
IPR006671 Cyclin_N 187 312
No external refs found!