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  5. Solyc05g005690.1.1

Solyc05g005690.1.1


Description : component RPS16 of SSU proteome


Gene families : OG0002343 (Archaeplastida) Phylogenetic Tree(s): OG0002343_tree ,
OG_05_0002210 (LandPlants) Phylogenetic Tree(s): OG_05_0002210_tree ,
OG_06_0002828 (SeedPlants) Phylogenetic Tree(s): OG_06_0002828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g005690.1.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00161540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
AMTR_s00046p00076360 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
AT2G09990 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.3 Archaeplastida
Cpa|evm.model.tig00000123.14 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 Archaeplastida
Cre13.g573351 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.34 Archaeplastida
GSVIVT01017923001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.39 Archaeplastida
Gb_05712 No alias component RPS16 of SSU proteome 0.19 Archaeplastida
LOC_Os11g03400.1 No alias component RPS16 of SSU proteome 0.19 Archaeplastida
LOC_Os12g03090.1 No alias component RPS16 of SSU proteome 0.2 Archaeplastida
MA_2656g0010 No alias 40S ribosomal protein S16 OS=Gossypium hirsutum... 0.12 Archaeplastida
MA_32670g0010 No alias component RPS16 of SSU proteome 0.26 Archaeplastida
Mp1g07720.1 No alias component RPS16 of SSU proteome 0.39 Archaeplastida
Mp1g14290.1 No alias component RPS16 of SSU proteome 0.39 Archaeplastida
Pp3c18_1350V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.35 Archaeplastida
Pp3c19_22410V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.41 Archaeplastida
Pp3c21_20630V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.36 Archaeplastida
Pp3c22_21090V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.45 Archaeplastida
Pp3c9_4180V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.24 Archaeplastida
Smo138369 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
Zm00001e009230_P001 No alias component RPS16 of SSU proteome 0.15 Archaeplastida
Zm00001e020865_P003 No alias component RPS16 of SSU proteome 0.19 Archaeplastida
Zm00001e039245_P001 No alias component RPS16 of SSU proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 15 147
No external refs found!