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  5. Solyc05g007250.3.1

Solyc05g007250.3.1


Description : component RPS9 of SSU proteome


Gene families : OG0001616 (Archaeplastida) Phylogenetic Tree(s): OG0001616_tree ,
OG_05_0001469 (LandPlants) Phylogenetic Tree(s): OG_05_0001469_tree ,
OG_06_0086567 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g007250.3.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AT5G15200 No alias Ribosomal protein S4 0.57 Archaeplastida
Cpa|evm.model.tig00000826.24 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.06 Archaeplastida
Cre08.g359750 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.4 Archaeplastida
GSVIVT01008028001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.22 Archaeplastida
GSVIVT01011384001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.51 Archaeplastida
GSVIVT01020020001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_19294 No alias component RPS9 of SSU proteome 0.04 Archaeplastida
Gb_41315 No alias component RPS9 of SSU proteome 0.28 Archaeplastida
LOC_Os03g05980.1 No alias component RPS9 of SSU proteome 0.45 Archaeplastida
LOC_Os11g38959.1 No alias component RPS9 of SSU proteome 0.4 Archaeplastida
MA_10429805g0030 No alias component RPS9 of SSU proteome 0.15 Archaeplastida
MA_10431745g0020 No alias component RPS9 of SSU proteome 0.17 Archaeplastida
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.54 Archaeplastida
Mp6g10930.1 No alias component RPS9 of SSU proteome 0.54 Archaeplastida
Pp3c12_9190V3.1 No alias Ribosomal protein S4 0.26 Archaeplastida
Pp3c13_19780V3.1 No alias Ribosomal protein S4 0.37 Archaeplastida
Pp3c27_1920V3.1 No alias Ribosomal protein S4 0.02 Archaeplastida
Pp3c3_23720V3.1 No alias Ribosomal protein S4 0.36 Archaeplastida
Pp3c4_15290V3.1 No alias Ribosomal protein S4 0.33 Archaeplastida
Pp3c6_17680V3.1 No alias Ribosomal protein S4 0.24 Archaeplastida
Smo157263 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.22 Archaeplastida
Smo74302 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.2 Archaeplastida
Zm00001e010819_P002 No alias component RPS9 of SSU proteome 0.59 Archaeplastida
Zm00001e018345_P001 No alias component RPS9 of SSU proteome 0.27 Archaeplastida
Zm00001e037961_P002 No alias component RPS9 of SSU proteome 0.34 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 109 152
IPR001912 Ribosomal_S4/S9_N 12 64
No external refs found!