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Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.212
Description : Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana
Gene families : OG0005446 (Archaeplastida) Phylogenetic Tree(s): OG0005446_tree ,
OG_05_0005645 (LandPlants) Phylogenetic Tree(s): OG_05_0005645_tree ,
OG_06_0006020 (SeedPlants) Phylogenetic Tree(s): OG_06_0006020_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00025p00176430 | |
| Cluster | HCCA: Cluster_235 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G22660 | No alias | rRNA processing protein-related | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00000880.12 | No alias | Probable rRNA-processing protein EBP2 homolog... | 0.01 | Archaeplastida | |
| Cre07.g351750 | No alias | Probable rRNA-processing protein EBP2 homolog... | 0.03 | Archaeplastida | |
| LOC_Os07g29320.1 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.03 | Archaeplastida | |
| MA_138177g0010 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.06 | Archaeplastida | |
| Mp3g18310.1 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.03 | Archaeplastida | |
| Pp3c6_25210V3.1 | No alias | rRNA processing protein-related | 0.04 | Archaeplastida | |
| Solyc01g006090.3.1 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.07 | Archaeplastida | |
| Solyc01g006170.4.1 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.05 | Archaeplastida | |
| Zm00001e010357_P001 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.03 | Archaeplastida | |
| Zm00001e013941_P001 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
| MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| MF | GO:0005525 | GTP binding | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Neighborhood |
| BP | GO:0006304 | DNA modification | IEP | Neighborhood |
| BP | GO:0006305 | DNA alkylation | IEP | Neighborhood |
| BP | GO:0006306 | DNA methylation | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| BP | GO:0044728 | DNA methylation or demethylation | IEP | Neighborhood |
| CC | GO:0044798 | nuclear transcription factor complex | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR008610 | Ebp2 | 6 | 275 |
| No external refs found! |