Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.221
Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP3 component
Gene families : OG0003127 (Archaeplastida) Phylogenetic Tree(s): OG0003127_tree ,
OG_05_0002232 (LandPlants) Phylogenetic Tree(s): OG_05_0002232_tree ,
OG_06_0002853 (SeedPlants) Phylogenetic Tree(s): OG_06_0002853_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00025p00182570 | |
Cluster | HCCA: Cluster_160 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G25890 | No alias | 60S acidic ribosomal protein family | 0.17 | Archaeplastida | |
AT5G57290 | No alias | 60S acidic ribosomal protein family | 0.17 | Archaeplastida | |
GSVIVT01010910001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.14 | Archaeplastida | |
Gb_31564 | No alias | component RPP3 of LSU proteome component | 0.12 | Archaeplastida | |
LOC_Os01g13080.1 | No alias | component RPP3 of LSU proteome component | 0.07 | Archaeplastida | |
LOC_Os06g48780.1 | No alias | component RPP3 of LSU proteome component | 0.08 | Archaeplastida | |
MA_10431312g0020 | No alias | component RPP3 of LSU proteome component. component... | 0.17 | Archaeplastida | |
MA_468112g0010 | No alias | component RPP3 of LSU proteome component | 0.02 | Archaeplastida | |
Mp3g07010.1 | No alias | component RPP3 of LSU proteome component | 0.18 | Archaeplastida | |
Pp3c21_16160V3.1 | No alias | 60S acidic ribosomal protein family | 0.14 | Archaeplastida | |
Pp3c22_2920V3.1 | No alias | 60S acidic ribosomal protein family | 0.15 | Archaeplastida | |
Smo105823 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | Archaeplastida | |
Solyc07g009330.4.1 | No alias | component RPP3 of LSU proteome component | 0.14 | Archaeplastida | |
Zm00001e013180_P001 | No alias | component RPP3 of LSU proteome component | 0.07 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005622 | intracellular | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006414 | translational elongation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000041 | transition metal ion transport | IEP | Neighborhood |
CC | GO:0000275 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003779 | actin binding | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0004866 | endopeptidase inhibitor activity | IEP | Neighborhood |
MF | GO:0004869 | cysteine-type endopeptidase inhibitor activity | IEP | Neighborhood |
MF | GO:0005509 | calcium ion binding | IEP | Neighborhood |
CC | GO:0005758 | mitochondrial intermembrane space | IEP | Neighborhood |
CC | GO:0005787 | signal peptidase complex | IEP | Neighborhood |
CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006412 | translation | IEP | Neighborhood |
BP | GO:0006457 | protein folding | IEP | Neighborhood |
BP | GO:0006465 | signal peptide processing | IEP | Neighborhood |
BP | GO:0006508 | proteolysis | IEP | Neighborhood |
BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0006825 | copper ion transport | IEP | Neighborhood |
CC | GO:0015934 | large ribosomal subunit | IEP | Neighborhood |
BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Neighborhood |
BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Neighborhood |
BP | GO:0016485 | protein processing | IEP | Neighborhood |
MF | GO:0016530 | metallochaperone activity | IEP | Neighborhood |
MF | GO:0016531 | copper chaperone activity | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
MF | GO:0019829 | cation-transporting ATPase activity | IEP | Neighborhood |
MF | GO:0022853 | active ion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0030414 | peptidase inhibitor activity | IEP | Neighborhood |
CC | GO:0031970 | organelle envelope lumen | IEP | Neighborhood |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
MF | GO:0036442 | proton-exporting ATPase activity | IEP | Neighborhood |
MF | GO:0042625 | ATPase coupled ion transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
CC | GO:0043233 | organelle lumen | IEP | Neighborhood |
BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:0044391 | ribosomal subunit | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044429 | mitochondrial part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044455 | mitochondrial membrane part | IEP | Neighborhood |
MF | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | IEP | Neighborhood |
CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | Neighborhood |
MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | Neighborhood |
MF | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | IEP | Neighborhood |
BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
BP | GO:0051604 | protein maturation | IEP | Neighborhood |
MF | GO:0061134 | peptidase regulator activity | IEP | Neighborhood |
MF | GO:0061135 | endopeptidase regulator activity | IEP | Neighborhood |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Neighborhood |
CC | GO:0070013 | intracellular organelle lumen | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
CC | GO:0098798 | mitochondrial protein complex | IEP | Neighborhood |
CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Neighborhood |
MF | GO:0140104 | molecular carrier activity | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:1905368 | peptidase complex | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |