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  5. AMTR_s00025p00186360

AMTR_s00025p00186360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.225

No description available


Gene families : OG0000031 (Archaeplastida) Phylogenetic Tree(s): OG0000031_tree ,
OG_05_0015120 (LandPlants) Phylogenetic Tree(s): OG_05_0015120_tree ,
OG_06_0014747 (SeedPlants) Phylogenetic Tree(s): OG_06_0014747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00186360
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AT4G14640 AtCML8, CAM8 calmodulin 8 0.05 Archaeplastida
AT4G37010 CEN2 centrin 2 0.03 Archaeplastida
GSVIVT01003796001 No alias Calmodulin-like protein 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01004914001 No alias Probable calcium-binding protein CML13 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01021797001 No alias Calmodulin-like protein 11 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os05g24780.1 No alias Probable calcium-binding protein CML21 OS=Oryza sativa... 0.02 Archaeplastida
LOC_Os07g12240.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os07g48340.1 No alias Probable calcium-binding protein CML24 OS=Oryza sativa... 0.02 Archaeplastida
MA_103558g0010 No alias Calcium-binding protein CML42 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_254754g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_269415g0010 No alias Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_27386g0010 No alias Probable calcium-binding protein CML27 OS=Oryza sativa... 0.05 Archaeplastida
MA_393053g0010 No alias Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_66990g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9257733g0010 No alias Calcium-binding protein CAST OS=Solanum tuberosum... 0.03 Archaeplastida
Mp6g06060.1 No alias Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c13_2400V3.1 No alias EF hand calcium-binding protein family 0.02 Archaeplastida
Pp3c17_17270V3.1 No alias centrin2 0.02 Archaeplastida
Pp3c5_10970V3.1 No alias calmodulin like 23 0.02 Archaeplastida
Pp3c6_1770V3.1 No alias EF hand calcium-binding protein family 0.02 Archaeplastida
Smo81875 No alias Calmodulin-2 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Smo83841 No alias Calmodulin-5/6/7/8 OS=Solanum tuberosum 0.03 Archaeplastida
Smo96597 No alias Calmodulin-like protein 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc02g063350.1.1 No alias Probable calcium-binding protein CML18 OS=Oryza sativa... 0.02 Archaeplastida
Solyc12g009630.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
InterPro domains Description Start Stop
IPR011992 EF-hand-dom_pair 124 186
No external refs found!