AMTR_s00025p00203150 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.260

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL11 component

Gene families : OG0001738 (Archaeplastida) Phylogenetic Tree(s): OG0001738_tree ,
OG_05_0001636 (LandPlants) Phylogenetic Tree(s): OG_05_0001636_tree ,
OG_06_0001883 (SeedPlants) Phylogenetic Tree(s): OG_06_0001883_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00203150
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AT2G42740	RPL16A	ribosomal protein large subunit 16A	0.13	Archaeplastida
AT3G58700	No alias	Ribosomal L5P family protein	0.14	Archaeplastida
AT4G18730	RPL16B	ribosomal protein L16B	0.24	Archaeplastida
AT5G45775	No alias	Ribosomal L5P family protein	0.29	Archaeplastida
Cpa\|evm.model.tig00020610.38	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
Cre01.g027000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	Archaeplastida
GSVIVT01020743001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
GSVIVT01021244001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	Archaeplastida
Gb_08546	No alias	component RPL11 of LSU proteome component	0.04	Archaeplastida
LOC_Os01g10820.1	No alias	component RPL11 of LSU proteome component	0.17	Archaeplastida
LOC_Os02g14059.1	No alias	component RPL11 of LSU proteome component	0.03	Archaeplastida
LOC_Os05g11710.1	No alias	component RPL11 of LSU proteome component	0.2	Archaeplastida
LOC_Os06g35730.1	No alias	component RPL11 of LSU proteome component	0.2	Archaeplastida
MA_57785g0010	No alias	60S ribosomal protein L11-1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_74060g0010	No alias	component RPL11 of LSU proteome component	0.03	Archaeplastida
MA_86694g0010	No alias	component RPL11 of LSU proteome component	0.21	Archaeplastida
Mp2g24740.1	No alias	component RPL11 of LSU proteome component	0.29	Archaeplastida
Mp6g18870.1	No alias	component RPL11 of LSU proteome component	0.02	Archaeplastida
Pp3c11_8070V3.1	No alias	ribosomal protein L16B	0.16	Archaeplastida
Pp3c1_7710V3.1	No alias	ribosomal protein L16B	0.21	Archaeplastida
Pp3c27_2260V3.1	No alias	Ribosomal L5P family protein	0.23	Archaeplastida
Pp3c2_33280V3.1	No alias	ribosomal protein L16B	0.05	Archaeplastida
Pp3c5_3870V3.1	No alias	Ribosomal L5P family protein	0.13	Archaeplastida
Pp3c7_20160V3.1	No alias	ribosomal protein large subunit 16A	0.26	Archaeplastida
Smo444767	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
Solyc02g086240.3.1	No alias	component RPL11 of LSU proteome component	0.22	Archaeplastida
Solyc07g055230.4.1	No alias	component RPL11 of LSU proteome component	0.18	Archaeplastida
Solyc10g007980.3.1	No alias	component RPL11 of LSU proteome component	0.22	Archaeplastida
Solyc12g010930.2.1	No alias	component RPL11 of LSU proteome component	0.24	Archaeplastida
Zm00001e014363_P001	No alias	no hits & (original description: none)	0.17	Archaeplastida
Zm00001e024913_P001	No alias	component RPL11 of LSU proteome component	0.2	Archaeplastida
Zm00001e026886_P003	No alias	component RPL11 of LSU proteome component	0.18	Archaeplastida
Zm00001e037255_P001	No alias	component RPL11 of LSU proteome component	0.17	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009200	deoxyribonucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009211	pyrimidine deoxyribonucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0046080	dUTP metabolic process	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002132	Ribosomal_L5	9	62
IPR002132	Ribosomal_L5	66	165

External Links

No external refs found!

AMTR_s00025p00203150 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation