AMTR_s00025p00230510 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.334

Description : DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0005088 (LandPlants) Phylogenetic Tree(s): OG_05_0005088_tree ,
OG_06_0005969 (SeedPlants) Phylogenetic Tree(s): OG_06_0005969_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00230510
Cluster	HCCA: Cluster_206

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00028p00237040	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G58060	No alias	RNA helicase family protein	0.02	Archaeplastida
AT2G01130	No alias	DEA(D/H)-box RNA helicase family protein	0.03	Archaeplastida
AT5G04895	No alias	DEA(D/H)-box RNA helicase family protein	0.03	Archaeplastida
Cpa\|evm.model.tig00000786.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre06.g266416	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	Archaeplastida
GSVIVT01023271001	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	Archaeplastida
LOC_Os01g02884.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os01g56190.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.04	Archaeplastida
MA_10429367g0010	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.02	Archaeplastida
MA_22839g0010	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.02	Archaeplastida
Pp3c11_11510V3.1	No alias	helicase in vascular tissue and tapetum	0.04	Archaeplastida
Pp3c26_14400V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Solyc01g103690.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	Archaeplastida
Solyc07g044930.3.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008026	ATP-dependent helicase activity	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0070035	purine NTP-dependent helicase activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
MF	GO:0003725	double-stranded RNA binding	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006006	glucose metabolic process	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006505	GPI anchor metabolic process	IEP	Neighborhood
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0006664	glycolipid metabolic process	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009247	glycolipid biosynthetic process	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0019318	hexose metabolic process	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
MF	GO:0050661	NADP binding	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
BP	GO:1903509	liposaccharide metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	409	567
IPR007502	Helicase-assoc_dom	884	985
IPR011709	DUF1605	1027	1169
IPR001650	Helicase_C	735	820

External Links

No external refs found!

AMTR_s00025p00230510 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation