Description : copper homeostasis co-regulator (KIN17)
Gene families : OG0004142 (Archaeplastida) Phylogenetic Tree(s): OG0004142_tree ,
OG_05_0006952 (LandPlants) Phylogenetic Tree(s): OG_05_0006952_tree ,
OG_06_0009683 (SeedPlants) Phylogenetic Tree(s): OG_06_0009683_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc05g054500.1.1 | |
Cluster | HCCA: Cluster_8 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00006p00268860 | evm_27.TU.AmTr_v1... | Nutrient uptake.copper uptake.regulation.KIN17 copper... | 0.03 | Archaeplastida | |
AT1G55460 | No alias | DNA/RNA-binding protein Kin17, conserved region | 0.03 | Archaeplastida | |
GSVIVT01008269001 | No alias | Nutrient uptake.copper uptake.regulation.KIN17 copper... | 0.05 | Archaeplastida | |
LOC_Os03g37330.1 | No alias | copper homeostasis co-regulator (KIN17) | 0.03 | Archaeplastida | |
MA_8631g0010 | No alias | copper homeostasis co-regulator (KIN17) | 0.03 | Archaeplastida | |
Mp4g05780.1 | No alias | copper homeostasis co-regulator (KIN17) | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | Neighborhood |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Neighborhood |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
BP | GO:0065003 | protein-containing complex assembly | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Neighborhood |
BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Neighborhood |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR019447 | DNA/RNA-bd_Kin17_cons_domain | 52 | 176 |
No external refs found! |