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  5. Solyc05g054920.4.1

Solyc05g054920.4.1


Description : RSZ32/33 RNA splicing factor


Gene families : OG0002802 (Archaeplastida) Phylogenetic Tree(s): OG0002802_tree ,
OG_05_0002795 (LandPlants) Phylogenetic Tree(s): OG_05_0002795_tree ,
OG_06_0003143 (SeedPlants) Phylogenetic Tree(s): OG_06_0003143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g054920.4.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00189640 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
AT2G37340 RSZ33,... arginine/serine-rich zinc knuckle-containing protein 33 0.06 Archaeplastida
Cpa|evm.model.tig00000802.14 No alias No description available 0.03 Archaeplastida
GSVIVT01032633001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
LOC_Os05g02880.1 No alias RSZ32/33 RNA splicing factor 0.03 Archaeplastida
Zm00001e027602_P005 No alias RSZ32/33 RNA splicing factor 0.04 Archaeplastida
Zm00001e027603_P003 No alias RSZ32/33 RNA splicing factor 0.08 Archaeplastida
Zm00001e029543_P002 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 13 73
IPR001878 Znf_CCHC 124 140
IPR001878 Znf_CCHC 103 118
No external refs found!