Solyc05g055640.4.1

Description : component RPL38 of LSU proteome component

Gene families : OG0004269 (Archaeplastida) Phylogenetic Tree(s): OG0004269_tree ,
OG_05_0004744 (LandPlants) Phylogenetic Tree(s): OG_05_0004744_tree ,
OG_06_0005941 (SeedPlants) Phylogenetic Tree(s): OG_06_0005941_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g055640.4.1
Cluster	HCCA: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
AT2G43460	No alias	Ribosomal L38e protein family	0.09	Archaeplastida
AT3G59540	No alias	Ribosomal L38e protein family	0.13	Archaeplastida
Cpa\|evm.model.tig00021719.6	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.01	Archaeplastida
Cre07.g325746	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	Archaeplastida
GSVIVT01010854001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
GSVIVT01019051001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Gb_16529	No alias	component RPL38 of LSU proteome component	0.04	Archaeplastida
Gb_29252	No alias	component RPL38 of LSU proteome component	0.06	Archaeplastida
LOC_Os11g24610.1	No alias	component RPL38 of LSU proteome component	0.07	Archaeplastida
MA_20588g0010	No alias	component RPL38 of LSU proteome component	0.02	Archaeplastida
Mp7g14520.1	No alias	component RPL38 of LSU proteome component	0.08	Archaeplastida
Pp3c10_20240V3.1	No alias	Ribosomal L38e protein family	0.07	Archaeplastida
Pp3c12_17990V3.1	No alias	Ribosomal L38e protein family	0.11	Archaeplastida
Pp3c3_25640V3.1	No alias	Ribosomal L38e protein family	0.08	Archaeplastida
Pp3c4_11700V3.1	No alias	Ribosomal L38e protein family	0.03	Archaeplastida
Smo270247	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
Zm00001e003730_P001	No alias	no hits & (original description: none)	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005743	mitochondrial inner membrane	IEP	Neighborhood
BP	GO:0006405	RNA export from nucleus	IEP	Neighborhood
BP	GO:0006406	mRNA export from nucleus	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Neighborhood
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Neighborhood
CC	GO:0016272	prefoldin complex	IEP	Neighborhood
CC	GO:0019866	organelle inner membrane	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
BP	GO:0050657	nucleic acid transport	IEP	Neighborhood
BP	GO:0050658	RNA transport	IEP	Neighborhood
BP	GO:0051028	mRNA transport	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
BP	GO:0051168	nuclear export	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051236	establishment of RNA localization	IEP	Neighborhood
CC	GO:0070469	respiratory chain	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	2	68

External Links

No external refs found!

Solyc05g055640.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation