Solyc06g005060.3.1

Description : aminoacyl-tRNA binding factor (eEF1A)

Gene families : OG0000191 (Archaeplastida) Phylogenetic Tree(s): OG0000191_tree ,
OG_05_0000317 (LandPlants) Phylogenetic Tree(s): OG_05_0000317_tree ,
OG_06_0000423 (SeedPlants) Phylogenetic Tree(s): OG_06_0000423_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g005060.3.1
Cluster	HCCA: Cluster_207

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00216110	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.13	Archaeplastida
AMTR_s00066p00072310	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.21	Archaeplastida
AT1G07920	No alias	GTP binding Elongation factor Tu family protein	0.19	Archaeplastida
AT1G07930	No alias	GTP binding Elongation factor Tu family protein	0.14	Archaeplastida
AT1G07940	No alias	GTP binding Elongation factor Tu family protein	0.1	Archaeplastida
AT5G60390	No alias	GTP binding Elongation factor Tu family protein	0.22	Archaeplastida
Cpa\|evm.model.tig00021352.57	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.04	Archaeplastida
Cre06.g284750	No alias	Protein biosynthesis.translation termination.eRF3...	0.02	Archaeplastida
Gb_22919	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.03	Archaeplastida
LOC_Os03g08010.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.08	Archaeplastida
LOC_Os03g08020.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.07	Archaeplastida
LOC_Os03g08050.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.1	Archaeplastida
MA_434977g0010	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.04	Archaeplastida
MA_651220g0010	No alias	Elongation factor 1-alpha OS=Oryza sativa subsp....	0.03	Archaeplastida
MA_7085077g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
Mp3g23400.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.14	Archaeplastida
Pp3c1_23850V3.1	No alias	GTP binding Elongation factor Tu family protein	0.11	Archaeplastida
Pp3c1_23900V3.1	No alias	GTP binding Elongation factor Tu family protein	0.02	Archaeplastida
Pp3c1_23920V3.1	No alias	GTP binding Elongation factor Tu family protein	0.2	Archaeplastida
Pp3c2_6650V3.1	No alias	GTP binding Elongation factor Tu family protein	0.09	Archaeplastida
Pp3c2_6770V3.1	No alias	GTP binding Elongation factor Tu family protein	0.06	Archaeplastida
Smo169717	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.04	Archaeplastida
Smo171512	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.02	Archaeplastida
Smo270693	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.02	Archaeplastida
Zm00001e026762_P001	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.11	Archaeplastida
Zm00001e026763_P003	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.09	Archaeplastida
Zm00001e030598_P002	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.04	Archaeplastida
Zm00001e031389_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e031390_P004	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.07	Archaeplastida
Zm00001e031391_P002	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.05	Archaeplastida
Zm00001e031407_P001	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.09	Archaeplastida
Zm00001e037355_P001	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.05	Archaeplastida
Zm00001e040640_P002	No alias	eRF3 peptide release factor	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006177	GMP biosynthetic process	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009163	nucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0031369	translation initiation factor binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042278	purine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046037	GMP metabolic process	IEP	Neighborhood
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004160	Transl_elong_EFTu/EF1A_C	322	429
IPR000795	TF_GTP-bd_dom	7	222
IPR004161	EFTu-like_2	248	313

External Links

No external refs found!

Solyc06g005060.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation