Solyc06g007670.4.1

Description : component RPL5 of LSU proteome component

Gene families : OG0002752 (Archaeplastida) Phylogenetic Tree(s): OG0002752_tree ,
OG_05_0002866 (LandPlants) Phylogenetic Tree(s): OG_05_0002866_tree ,
OG_06_0003201 (SeedPlants) Phylogenetic Tree(s): OG_06_0003201_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g007670.4.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00162800	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	Archaeplastida
AT3G25520	OLI5, RPL5A, PGY3, ATL5	ribosomal protein L5	0.43	Archaeplastida
AT5G39740	OLI7, RPL5B	ribosomal protein L5 B	0.43	Archaeplastida
Cpa\|evm.model.tig00000194.49	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.35	Archaeplastida
Cre14.g621450	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	Archaeplastida
GSVIVT01038188001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.25	Archaeplastida
Gb_16695	No alias	component RPL5 of LSU proteome component	0.17	Archaeplastida
LOC_Os01g67134.1	No alias	component RPL5 of LSU proteome component	0.34	Archaeplastida
MA_70965g0010	No alias	component RPL5 of LSU proteome component	0.25	Archaeplastida
Mp4g15800.1	No alias	component RPL5 of LSU proteome component	0.44	Archaeplastida
Pp3c11_6420V3.1	No alias	ribosomal protein L5 B	0.3	Archaeplastida
Pp3c1_7160V3.1	No alias	ribosomal protein L5 B	0.12	Archaeplastida
Pp3c2_31540V3.1	No alias	ribosomal protein L5 B	0.14	Archaeplastida
Pp3c7_25660V3.1	No alias	ribosomal protein L5 B	0.27	Archaeplastida
Smo144921	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
Zm00001e000256_P001	No alias	component RPL5 of LSU proteome component	0.21	Archaeplastida
Zm00001e018972_P001	No alias	component RPL5 of LSU proteome component	0.17	Archaeplastida
Zm00001e028563_P004	No alias	component RPL5 of LSU proteome component	0.33	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005485	Rbsml_L5_euk/L18_arc	14	175
IPR025607	Rbsml_L5e/L18P_C	191	280

External Links

No external refs found!

Solyc06g007670.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation