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  5. Solyc06g008170.3.1

Solyc06g008170.3.1


Description : component RPL23 of LSU proteome component


Gene families : OG0001339 (Archaeplastida) Phylogenetic Tree(s): OG0001339_tree ,
OG_05_0001717 (LandPlants) Phylogenetic Tree(s): OG_05_0001717_tree ,
OG_06_0001821 (SeedPlants) Phylogenetic Tree(s): OG_06_0001821_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g008170.3.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00206470 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
AT1G04480 No alias Ribosomal protein L14p/L23e family protein 0.29 Archaeplastida
AT2G33370 No alias Ribosomal protein L14p/L23e family protein 0.45 Archaeplastida
AT3G04400 emb2171 Ribosomal protein L14p/L23e family protein 0.37 Archaeplastida
Cpa|evm.model.tig00021290.9 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
Cre04.g211800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.35 Archaeplastida
GSVIVT01027905001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
GSVIVT01028407001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.4 Archaeplastida
Gb_21541 No alias component RPL23 of LSU proteome component 0.22 Archaeplastida
LOC_Os02g56960.1 No alias component RPL23 of LSU proteome component 0.33 Archaeplastida
LOC_Os03g04590.1 No alias component RPL23 of LSU proteome component 0.3 Archaeplastida
LOC_Os10g32920.1 No alias component RPL23 of LSU proteome component 0.36 Archaeplastida
MA_10429866g0030 No alias 60S ribosomal protein L23 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10432200g0010 No alias component RPL23 of LSU proteome component 0.35 Archaeplastida
MA_950121g0010 No alias component RPL23 of LSU proteome component 0.04 Archaeplastida
Mp6g14310.1 No alias component RPL23 of LSU proteome component 0.09 Archaeplastida
Pp3c16_13640V3.1 No alias Ribosomal protein L14p/L23e family protein 0.29 Archaeplastida
Pp3c23_4520V3.1 No alias Ribosomal protein L14p/L23e family protein 0.03 Archaeplastida
Pp3c24_8570V3.1 No alias Ribosomal protein L14p/L23e family protein 0.21 Archaeplastida
Pp3c27_860V3.1 No alias Ribosomal protein L14p/L23e family protein 0.34 Archaeplastida
Pp3c8_12080V3.1 No alias Ribosomal protein L14p/L23e family protein 0.08 Archaeplastida
Pp3c8_16130V3.1 No alias Ribosomal protein L14p/L23e family protein 0.28 Archaeplastida
Smo165708 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Zm00001e000323_P001 No alias component RPL23 of LSU proteome component 0.32 Archaeplastida
Zm00001e012721_P001 No alias component RPL23 of LSU proteome component 0.27 Archaeplastida
Zm00001e023614_P001 No alias component RPL23 of LSU proteome component 0.24 Archaeplastida
Zm00001e038953_P001 No alias component RPL23 of LSU proteome component 0.33 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000218 Ribosomal_L14P 22 140
No external refs found!