Solyc06g009290.4.1

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000418 (LandPlants) Phylogenetic Tree(s): OG_05_0000418_tree ,
OG_06_0000295 (SeedPlants) Phylogenetic Tree(s): OG_06_0000295_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g009290.4.1
Cluster	HCCA: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00018p00193820	evm_27.TU.AmTr_v1...	ABC transporter B family member 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00045p00109940	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00145p00075460	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AT1G02520	PGP11	P-glycoprotein 11	0.04	Archaeplastida
AT2G47000	ATPGP4, PGP4, ABCB4, MDR4	ATP binding cassette subfamily B4	0.02	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.03	Archaeplastida
AT3G28415	No alias	ABC transporter family protein	0.04	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.06	Archaeplastida
AT4G01830	PGP5	P-glycoprotein 5	0.04	Archaeplastida
AT4G18050	PGP9	P-glycoprotein 9	0.07	Archaeplastida
GSVIVT01009946001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01028256001	No alias	Solute transport.primary active transport.ABC...	0.06	Archaeplastida
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Gb_02468	No alias	subfamily ABCB transporter	0.08	Archaeplastida
Gb_02469	No alias	subfamily ABCB transporter	0.07	Archaeplastida
Gb_07563	No alias	subfamily ABCB transporter	0.06	Archaeplastida
Gb_08614	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_08616	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_08707	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.06	Archaeplastida
Gb_33057	No alias	subfamily ABCB transporter	0.06	Archaeplastida
Gb_33058	No alias	subfamily ABCB transporter	0.05	Archaeplastida
LOC_Os01g35030.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os01g50160.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os02g09720.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os03g17180.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_10432169g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_10436810g0020	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_107576g0010	No alias	subfamily ABCB transporter	0.05	Archaeplastida
MA_111099g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_6870g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_83806g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_93218g0020	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp1g26440.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp7g04390.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Pp3c14_2470V3.1	No alias	ABC transporter family protein	0.02	Archaeplastida
Pp3c17_16450V3.1	No alias	ATP binding cassette subfamily B19	0.03	Archaeplastida
Smo123915	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo408755	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Smo99885	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Solyc03g005860.4.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc08g076720.4.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc12g098840.3.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Zm00001e017444_P002	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e020070_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e028117_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e041087_P002	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e041760_P001	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008061	chitin binding	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0008283	cell proliferation	IEP	Neighborhood
MF	GO:0009916	alternative oxidase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Neighborhood
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016830	carbon-carbon lyase activity	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	855	1005
IPR011527	ABC1_TM_dom	1	125
IPR011527	ABC1_TM_dom	515	787
IPR003439	ABC_transporter-like	196	342

External Links

No external refs found!

Solyc06g009290.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation