Solyc06g035600.3.1

Description : Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana (sp|q9sjz3|pp169_arath : 447.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0012126 (LandPlants) Phylogenetic Tree(s): OG_05_0012126_tree ,
OG_06_0012997 (SeedPlants) Phylogenetic Tree(s): OG_06_0012997_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g035600.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00041p00129840	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g32430,...	0.05	Archaeplastida
AMTR_s00057p00172690	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g37170...	0.04	Archaeplastida
AT2G02980	OTP85	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT5G55740	CRR21	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
GSVIVT01000244001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01007983001	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.04	Archaeplastida
GSVIVT01019231001	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
GSVIVT01021246001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
GSVIVT01024493001	No alias	Pentatricopeptide repeat-containing protein At4g39952,...	0.04	Archaeplastida
GSVIVT01033004001	No alias	Pentatricopeptide repeat-containing protein At3g26782,...	0.05	Archaeplastida
GSVIVT01035618001	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
Gb_01327	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
Gb_08036	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_19693	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.08	Archaeplastida
Gb_21270	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_23267	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_25283	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Gb_33411	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_35599	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_40766	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
LOC_Os01g10800.1	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
LOC_Os04g39410.1	No alias	RNA editing factor (OTP86)	0.04	Archaeplastida
MA_653417g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_71104g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
Smo111075	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Zm00001e003605_P001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Zm00001e004121_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e011467_P004	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
Zm00001e014800_P001	No alias	Pentatricopeptide repeat-containing protein At2g29760,...	0.03	Archaeplastida
Zm00001e031351_P001	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
MF	GO:0009975	cyclase activity	IEP	Neighborhood
MF	GO:0009976	tocopherol cyclase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	279	307
IPR002885	Pentatricopeptide_repeat	478	509
IPR022669	Ribosomal_L2_C	602	641
IPR002885	Pentatricopeptide_repeat	410	458
IPR002885	Pentatricopeptide_repeat	310	357
IPR002885	Pentatricopeptide_repeat	80	109
IPR002885	Pentatricopeptide_repeat	150	178
IPR002885	Pentatricopeptide_repeat	180	209

External Links

No external refs found!

Solyc06g035600.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation