AMTR_s00026p00042160 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00026.14

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS3a component

Gene families : OG0001983 (Archaeplastida) Phylogenetic Tree(s): OG0001983_tree ,
OG_05_0001683 (LandPlants) Phylogenetic Tree(s): OG_05_0001683_tree ,
OG_06_0002405 (SeedPlants) Phylogenetic Tree(s): OG_06_0002405_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00026p00042160
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
AT3G04840	No alias	Ribosomal protein S3Ae	0.12	Archaeplastida
AT4G34670	No alias	Ribosomal protein S3Ae	0.13	Archaeplastida
Cpa\|evm.model.tig00020710.39	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Cre13.g568650	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
GSVIVT01018024001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
GSVIVT01021836001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Gb_02289	No alias	component RPS3a of SSU proteome	0.03	Archaeplastida
LOC_Os02g18550.1	No alias	component RPS3a of SSU proteome	0.05	Archaeplastida
LOC_Os03g10340.1	No alias	component RPS3a of SSU proteome	0.08	Archaeplastida
LOC_Os12g21798.1	No alias	component RPS3a of SSU proteome	0.08	Archaeplastida
MA_124901g0010	No alias	component RPS3a of SSU proteome	0.06	Archaeplastida
MA_31004g0010	No alias	component RPS3a of SSU proteome	0.07	Archaeplastida
Mp6g02810.1	No alias	component RPS3a of SSU proteome	0.1	Archaeplastida
Pp3c11_17260V3.1	No alias	Ribosomal protein S3Ae	0.04	Archaeplastida
Pp3c18_2090V3.1	No alias	Ribosomal protein S3Ae	0.09	Archaeplastida
Pp3c21_21510V3.1	No alias	Ribosomal protein S3Ae	0.1	Archaeplastida
Pp3c22_18300V3.1	No alias	Ribosomal protein S3Ae	0.07	Archaeplastida
Pp3c4_14160V3.1	No alias	Ribosomal protein S3Ae	0.09	Archaeplastida
Smo160008	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Smo271906	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Solyc03g097900.3.1	No alias	component RPS3a of SSU proteome	0.09	Archaeplastida
Solyc06g072490.3.1	No alias	component RPS3a of SSU proteome	0.09	Archaeplastida
Solyc09g082520.3.1	No alias	component RPS3a of SSU proteome	0.03	Archaeplastida
Zm00001e000767_P001	No alias	No annotation	0.07	Archaeplastida
Zm00001e038777_P001	No alias	component RPS3a of SSU proteome	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003883	CTP synthase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	Neighborhood
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006839	mitochondrial transport	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0070585	protein localization to mitochondrion	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0071806	protein transmembrane transport	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001593	Ribosomal_S3Ae	12	222

External Links

No external refs found!

AMTR_s00026p00042160 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation