- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : No annotation
Gene families : OG0003427 (Archaeplastida) Phylogenetic Tree(s): OG0003427_tree ,
OG_05_0109294 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0087136 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc06g053590.4.1 | |
| Cluster | HCCA: Cluster_131 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G79280 | NUA, AtTPR | nuclear pore anchor | 0.05 | Archaeplastida | |
| Cpa|evm.model.tig00000404.46 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.07 | Archaeplastida | |
| GSVIVT01036698001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.1 | Archaeplastida | |
| Gb_36757 | No alias | NUA nucleoporin of nuclear pore complex | 0.06 | Archaeplastida | |
| LOC_Os02g50790.2 | No alias | no hits & (original description: none) | 0.1 | Archaeplastida | |
| LOC_Os02g50799.1 | No alias | NUA nucleoporin of nuclear pore complex | 0.03 | Archaeplastida | |
| MA_10287420g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| MA_109011g0010 | No alias | NUA nucleoporin of nuclear pore complex | 0.03 | Archaeplastida | |
| MA_113769g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_125713g0010 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
| Mp2g14600.1 | No alias | NUA nucleoporin of nuclear pore complex | 0.05 | Archaeplastida | |
| Pp3c8_8020V3.1 | No alias | nuclear pore anchor | 0.05 | Archaeplastida | |
| Smo444132 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.06 | Archaeplastida | |
| Zm00001e023916_P004 | No alias | NUA nucleoporin of nuclear pore complex | 0.09 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000123 | histone acetyltransferase complex | IEP | Neighborhood |
| CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | Neighborhood |
| CC | GO:0000178 | exosome (RNase complex) | IEP | Neighborhood |
| BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | Neighborhood |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006476 | protein deacetylation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016575 | histone deacetylation | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| CC | GO:0031248 | protein acetyltransferase complex | IEP | Neighborhood |
| MF | GO:0031491 | nucleosome binding | IEP | Neighborhood |
| BP | GO:0035601 | protein deacylation | IEP | Neighborhood |
| BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| CC | GO:0070461 | SAGA-type complex | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0098732 | macromolecule deacylation | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| CC | GO:1902493 | acetyltransferase complex | IEP | Neighborhood |
| CC | GO:1902494 | catalytic complex | IEP | Neighborhood |
| CC | GO:1905354 | exoribonuclease complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |