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  5. Solyc06g053900.4.1

Solyc06g053900.4.1


Description : 3-ketoacyl-CoA synthase (KCS)


Gene families : OG0000123 (Archaeplastida) Phylogenetic Tree(s): OG0000123_tree ,
OG_05_0109300 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0087142 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g053900.4.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268740 evm_27.TU.AmTr_v1... Lipid metabolism.fatty acid synthesis.fatty acid... 0.03 Archaeplastida
AMTR_s00007p00267760 evm_27.TU.AmTr_v1... Lipid metabolism.fatty acid synthesis.fatty acid... 0.05 Archaeplastida
AMTR_s00079p00192440 evm_27.TU.AmTr_v1... Lipid metabolism.fatty acid synthesis.fatty acid... 0.04 Archaeplastida
AT4G34510 KCS17 3-ketoacyl-CoA synthase 17 0.05 Archaeplastida
GSVIVT01022919001 No alias Lipid metabolism.fatty acid synthesis.fatty acid... 0.02 Archaeplastida
GSVIVT01026270001 No alias Lipid metabolism.fatty acid synthesis.fatty acid... 0.02 Archaeplastida
GSVIVT01027424001 No alias Lipid metabolism.fatty acid synthesis.fatty acid... 0.03 Archaeplastida
GSVIVT01034244001 No alias Lipid metabolism.fatty acid synthesis.fatty acid... 0.02 Archaeplastida
GSVIVT01035769001 No alias Lipid metabolism.fatty acid synthesis.fatty acid... 0.06 Archaeplastida
LOC_Os03g06705.1 No alias 3-ketoacyl-CoA synthase (KCS) 0.02 Archaeplastida
LOC_Os03g12030.1 No alias 3-ketoacyl-CoA synthase (KCS) 0.03 Archaeplastida
LOC_Os06g14810.1 No alias 3-ketoacyl-CoA synthase (KCS) 0.04 Archaeplastida
LOC_Os06g15170.1 No alias 3-ketoacyl-CoA synthase (KCS) 0.04 Archaeplastida
LOC_Os09g19650.1 No alias 3-ketoacyl-CoA synthase (KCS) 0.03 Archaeplastida
Pp3c10_2580V3.1 No alias 3-ketoacyl-CoA synthase 11 0.04 Archaeplastida
Pp3c1_26250V3.1 No alias 3-ketoacyl-CoA synthase 11 0.03 Archaeplastida
Pp3c1_37250V3.1 No alias 3-ketoacyl-CoA synthase 4 0.01 Archaeplastida
Pp3c2_4800V3.1 No alias 3-ketoacyl-CoA synthase 4 0.02 Archaeplastida
Pp3c3_31430V3.1 No alias 3-ketoacyl-CoA synthase 4 0.03 Archaeplastida
Pp3c8_1690V3.1 No alias 3-ketoacyl-CoA synthase 11 0.03 Archaeplastida
Smo231244 No alias Lipid metabolism.fatty acid synthesis.fatty acid... 0.05 Archaeplastida
Smo79947 No alias Lipid metabolism.fatty acid synthesis.fatty acid... 0.01 Archaeplastida
Zm00001e000476_P001 No alias 3-ketoacyl-CoA synthase (KCS) 0.02 Archaeplastida
Zm00001e000593_P001 No alias 3-ketoacyl-CoA synthase (KCS) 0.02 Archaeplastida
Zm00001e000868_P002 No alias 3-ketoacyl-CoA synthase (KCS) 0.02 Archaeplastida
Zm00001e001847_P001 No alias 3-ketoacyl-CoA synthase (KCS) 0.02 Archaeplastida
Zm00001e023474_P001 No alias 3-ketoacyl-CoA synthase (KCS) 0.02 Archaeplastida
Zm00001e037353_P002 No alias 3-ketoacyl-CoA synthase (KCS) 0.02 Archaeplastida
Zm00001e038586_P001 No alias 3-ketoacyl-CoA synthase (KCS) 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006633 fatty acid biosynthetic process IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013747 ACP_syn_III_C 382 462
IPR013601 FAE1_typ3_polyketide_synth 79 363
No external refs found!