Solyc06g062520.1.1

Description : transcription factor (DOF)

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g062520.1.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00030p00153440	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT4G24060	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01016887001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01019619001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01034189001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Gb_07177	No alias	transcription factor (DOF)	0.04	Archaeplastida
Gb_20867	No alias	Cyclic dof factor 3 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Gb_23561	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os01g15900.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os02g45200.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os02g47810.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os03g38870.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os03g60630.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
LOC_Os07g32510.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os09g29960.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
Mp1g18540.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp2g20790.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c4_850V3.1	No alias	cycling DOF factor 3	0.03	Archaeplastida
Solyc02g077950.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g121400.1.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc06g069760.3.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
Zm00001e002951_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e007228_P002	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e010022_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e011750_P002	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e015701_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e019172_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.08	Archaeplastida
Zm00001e023435_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e034454_P001	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e041944_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	19	75

External Links

No external refs found!

Solyc06g062520.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation