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  5. Solyc06g065680.3.1

Solyc06g065680.3.1


Description : cyclin (CYCA)


Gene families : OG0000635 (Archaeplastida) Phylogenetic Tree(s): OG0000635_tree ,
OG_05_0000438 (LandPlants) Phylogenetic Tree(s): OG_05_0000438_tree ,
OG_06_0000371 (SeedPlants) Phylogenetic Tree(s): OG_06_0000371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g065680.3.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.09 Archaeplastida
AMTR_s00068p00198800 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.06 Archaeplastida
AT1G44110 CYCA1;1 Cyclin A1;1 0.09 Archaeplastida
AT1G80370 CYCA2;4 Cyclin A2;4 0.05 Archaeplastida
AT5G43080 CYCA3;1 Cyclin A3;1 0.08 Archaeplastida
Cpa|evm.model.tig00000076.67 No alias Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
GSVIVT01008823001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.11 Archaeplastida
GSVIVT01009399001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.06 Archaeplastida
GSVIVT01035718001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.04 Archaeplastida
GSVIVT01037895001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 Archaeplastida
Gb_03779 No alias cyclin (CYCA) 0.05 Archaeplastida
Gb_07594 No alias cyclin (CYCA) 0.07 Archaeplastida
Gb_10619 No alias cyclin (CYCA) 0.07 Archaeplastida
Gb_21011 No alias cyclin (CYCA) 0.04 Archaeplastida
LOC_Os01g13260.1 No alias cyclin (CYCA) 0.04 Archaeplastida
LOC_Os03g41100.1 No alias cyclin (CYCA) 0.08 Archaeplastida
LOC_Os12g31810.1 No alias cyclin (CYCA) 0.03 Archaeplastida
LOC_Os12g39210.1 No alias cyclin (CYCA) 0.12 Archaeplastida
MA_103138g0010 No alias cyclin (CYCA) 0.05 Archaeplastida
MA_28323g0010 No alias cyclin (CYCA) 0.04 Archaeplastida
MA_6619g0010 No alias cyclin (CYCA) 0.06 Archaeplastida
MA_88982g0010 No alias cyclin (CYCA) 0.03 Archaeplastida
Mp2g25500.1 No alias cyclin (CYCA) 0.06 Archaeplastida
Pp3c17_22710V3.1 No alias Cyclin A1;1 0.02 Archaeplastida
Pp3c2_8770V3.1 No alias Cyclin A1;1 0.02 Archaeplastida
Pp3c2_9020V3.1 No alias Cyclin A1;1 0.02 Archaeplastida
Smo442428 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.02 Archaeplastida
Smo97411 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.02 Archaeplastida
Zm00001e003049_P002 No alias cyclin (CYCA) 0.12 Archaeplastida
Zm00001e005138_P001 No alias cyclin (CYCA) 0.08 Archaeplastida
Zm00001e013250_P002 No alias cyclin (CYCA) 0.03 Archaeplastida
Zm00001e017335_P001 No alias cyclin (CYCA) 0.11 Archaeplastida
Zm00001e017993_P001 No alias cyclin (CYCA) 0.05 Archaeplastida
Zm00001e026125_P002 No alias cyclin (CYCA) 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0000818 nuclear MIS12/MIND complex IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 362 484
IPR006671 Cyclin_N 233 359
No external refs found!