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  5. Solyc06g069440.3.1

Solyc06g069440.3.1


Description : Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana (sp|q9lih5|c3h38_arath : 96.3)


Gene families : OG0001445 (Archaeplastida) Phylogenetic Tree(s): OG0001445_tree ,
OG_05_0001091 (LandPlants) Phylogenetic Tree(s): OG_05_0001091_tree ,
OG_06_0001027 (SeedPlants) Phylogenetic Tree(s): OG_06_0001027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g069440.3.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00086540 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 38... 0.03 Archaeplastida
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Archaeplastida
Gb_00875 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Gb_19122 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Gb_26302 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
LOC_Os03g11580.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os05g41790.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
MA_111475g0010 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.02 Archaeplastida
MA_111475g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_321233g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_8408g0030 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.05 Archaeplastida
Pp3c12_4860V3.1 No alias histone-lysine N-methyltransferases 0.03 Archaeplastida
Pp3c4_15980V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Archaeplastida
Smo439131 No alias No description available 0.03 Archaeplastida
Zm00001e000843_P002 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!